STRINGSTRING
Z518_03843 Z518_03843 Z518_10709 Z518_10709 Z518_10371 Z518_10371 Z518_10556 Z518_10556 Z518_09047 Z518_09047 Z518_09163 Z518_09163 Z518_09348 Z518_09348 Z518_09398 Z518_09398 Z518_09504 Z518_09504 Z518_09524 Z518_09524 Z518_08508 Z518_08508 Z518_08765 Z518_08765 Z518_06502 Z518_06502 Z518_06567 Z518_06567 Z518_06754 Z518_06754 Z518_07070 Z518_07070 Z518_07310 Z518_07310 Z518_07350 Z518_07350 Z518_07390 Z518_07390 Z518_07440 Z518_07440 Z518_07761 Z518_07761 Z518_05159 Z518_05159 Z518_06124 Z518_06124 Z518_03799 Z518_03799 Z518_03820 Z518_03820 Z518_04021 Z518_04021 Z518_04418 Z518_04418 Z518_04498 Z518_04498 Z518_04733 Z518_04733 Z518_04908 Z518_04908 Z518_02115 Z518_02115 Z518_02195 Z518_02195 Z518_02571 Z518_02571 Z518_02641 Z518_02641 Z518_02651 Z518_02651 Z518_02838 Z518_02838 Z518_02853 Z518_02853 Z518_02928 Z518_02928 Z518_03253 Z518_03253 Z518_03389 Z518_03389 Z518_00180 Z518_00180 Z518_00411 Z518_00411 Z518_00838 Z518_00838 Z518_00913 Z518_00913 Z518_01023 Z518_01023 Z518_01058 Z518_01058 Z518_01343 Z518_01343 Z518_01469 Z518_01469 Z518_01519 Z518_01519 Z518_11256 Z518_11256 Z518_10265 Z518_10265 Z518_10351 Z518_10351 Z518_10577 Z518_10577 Z518_10643 Z518_10643 Z518_10668 Z518_10668 Z518_09838 Z518_09838 Z518_10149 Z518_10149 Z518_10204 Z518_10204 Z518_09113 Z518_09113 Z518_09199 Z518_09199 Z518_09349 Z518_09349 Z518_09444 Z518_09444 Z518_09540 Z518_09540 Z518_08202 Z518_08202 Z518_08274 Z518_08274 Z518_07266 Z518_07266 Z518_05185 Z518_05185 Z518_05216 Z518_05216 Z518_05256 Z518_05256 LSM8 LSM8 Z518_05749 Z518_05749 LSM4 LSM4 Z518_06385 Z518_06385 Z518_03785 Z518_03785 Z518_03861 Z518_03861 Z518_03977 Z518_03977 Z518_04052 Z518_04052 Z518_04749 Z518_04749 Z518_01846 Z518_01846 Z518_02547 Z518_02547 Z518_02934 Z518_02934 Z518_03159 Z518_03159 Z518_03380 Z518_03380 Z518_00216 Z518_00216 Z518_00533 Z518_00533 Z518_00613 Z518_00613 Z518_00959 Z518_00959 Z518_00994 Z518_00994 Z518_01124 Z518_01124 Z518_01129 Z518_01129 Z518_01184 Z518_01184 Z518_01199 Z518_01199 Z518_01520 Z518_01520 Z518_01647 Z518_01647 Z518_11076 Z518_11076 Z518_11106 Z518_11106 Z518_10856 Z518_10856 Z518_10251 Z518_10251 Z518_10286 Z518_10286 Z518_10443 Z518_10443 Z518_09659 Z518_09659 Z518_09704 Z518_09704 Z518_09969 Z518_09969 Z518_11028 Z518_11028 Z518_11038 Z518_11038 Z518_08188 Z518_08188 Z518_11073 Z518_11073 Z518_10848 Z518_10848 Z518_10858 Z518_10858 Z518_08455 Z518_08455 Z518_10596 Z518_10596 Z518_06996 Z518_06996 PAN2 PAN2 Z518_07472 Z518_07472 Z518_07482 Z518_07482 Z518_09267 Z518_09267 Z518_09558 Z518_09558 Z518_08210 Z518_08210 Z518_08292 Z518_08292 Z518_05896 Z518_05896 Z518_05991 Z518_05991 Z518_08603 Z518_08603 Z518_08784 Z518_08784 Z518_08824 Z518_08824 Z518_06331 Z518_06331 Z518_06953 Z518_06953 Z518_07224 Z518_07224 Z518_07239 Z518_07239 Z518_04148 Z518_04148 Z518_07454 Z518_07454 Z518_04710 Z518_04710 Z518_07755 Z518_07755 Z518_05269 Z518_05269 Z518_05531 Z518_05531 Z518_02317 Z518_02317 Z518_05863 Z518_05863 Z518_02704 Z518_02704 Z518_02709 Z518_02709 Z518_02744 Z518_02744 Z518_06273 Z518_06273 LSM1 LSM1 Z518_11367 Z518_11367 Z518_04010 Z518_04010 Z518_11122 Z518_11122 Z518_04055 Z518_04055 Z518_10702 Z518_10702 Z518_00192 Z518_00192 Z518_10797 Z518_10797 Z518_10832 Z518_10832 Z518_04417 Z518_04417 Z518_04437 Z518_04437 Z518_04442 Z518_04442 Z518_00725 Z518_00725 Z518_04777 Z518_04777 Z518_04782 Z518_04782 Z518_10600 Z518_10600 Z518_04897 Z518_04897 Z518_04977 Z518_04977 Z518_09715 Z518_09715 Z518_01075 Z518_01075 Z518_09770 Z518_09770 Z518_02044 Z518_02044 Z518_01401 Z518_01401 Z518_02395 Z518_02395 Z518_02405 Z518_02405 Z518_10066 Z518_10066 Z518_10141 Z518_10141 Z518_01597 Z518_01597 Z518_02565 Z518_02565 Z518_09015 Z518_09015 Z518_02972 Z518_02972 Z518_02977 Z518_02977 Z518_09321 Z518_09321 CLP1 CLP1 Z518_08079 Z518_08079 Z518_08401 Z518_08401 Z518_00606 Z518_00606 Z518_08758 Z518_08758 Z518_00872 Z518_00872 Z518_06580 Z518_06580 Z518_06686 Z518_06686 Z518_06777 Z518_06777 Z518_06952 Z518_06952 Z518_01202 Z518_01202 Z518_07288 Z518_07288 Z518_07298 Z518_07298 Z518_01574 Z518_01574 Z518_07473 Z518_07473 Z518_01720 Z518_01720 Z518_07814 Z518_07814 Z518_05218 Z518_05218 Z518_05233 Z518_05233 Z518_05806 Z518_05806 Z518_06017 Z518_06017 Z518_06187 Z518_06187 Z518_03782 Z518_03782 Z518_03989 Z518_03989 Z518_04144 Z518_04144 Z518_04346 Z518_04346 Z518_04901 Z518_04901 Z518_01843 Z518_01843 Z518_02258 Z518_02258 PAN3 PAN3 Z518_02534 Z518_02534 Z518_02791 Z518_02791 Z518_03021 Z518_03021 Z518_03096 Z518_03096 Z518_03116 Z518_03116 Z518_03251 Z518_03251 Z518_03552 Z518_03552 Z518_00028 Z518_00028 Z518_00178 Z518_00178 Z518_00193 Z518_00193 Z518_00479 Z518_00479 Z518_00796 Z518_00796 Z518_00841 Z518_00841 Z518_01086 Z518_01086 Z518_01171 Z518_01171 Z518_01296 Z518_01296 Z518_01573 Z518_01573 Z518_01734 Z518_01734
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Z518_03843annotation not available (394 aa)
Z518_10709annotation not available (254 aa)
Z518_10371Belongs to the protein kinase superfamily. (420 aa)
Z518_10556annotation not available (204 aa)
Z518_09047annotation not available (315 aa)
Z518_09163annotation not available (990 aa)
Z518_09348annotation not available (521 aa)
Z518_09398U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
Z518_09504annotation not available (327 aa)
Z518_09524Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (324 aa)
Z518_08508annotation not available (318 aa)
Z518_08765annotation not available (764 aa)
Z518_06502annotation not available (186 aa)
Z518_06567annotation not available (867 aa)
Z518_06754annotation not available (301 aa)
Z518_07070annotation not available (575 aa)
Z518_07310mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family. (420 aa)
Z518_07350annotation not available (267 aa)
Z518_07390annotation not available (403 aa)
Z518_07440annotation not available (291 aa)
Z518_07761annotation not available (337 aa)
Z518_05159annotation not available (782 aa)
Z518_06124annotation not available (656 aa)
Z518_03799annotation not available (329 aa)
Z518_03820annotation not available (323 aa)
Z518_04021annotation not available (685 aa)
Z518_04418annotation not available (274 aa)
Z518_04498annotation not available (494 aa)
Z518_04733annotation not available (566 aa)
Z518_04908annotation not available (82 aa)
Z518_02115annotation not available (669 aa)
Z518_02195annotation not available (743 aa)
Z518_02571tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs. (753 aa)
Z518_02641annotation not available (209 aa)
Z518_02651Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (605 aa)
Z518_02838annotation not available (316 aa)
Z518_02853annotation not available (3198 aa)
Z518_02928annotation not available (358 aa)
Z518_03253annotation not available (254 aa)
Z518_03389annotation not available (476 aa)
Z518_00180annotation not available (414 aa)
Z518_00411annotation not available (686 aa)
Z518_00838annotation not available (458 aa)
Z518_00913annotation not available (363 aa)
Z518_01023annotation not available (272 aa)
Z518_01058annotation not available (286 aa)
Z518_01343annotation not available (941 aa)
Z518_01469annotation not available (318 aa)
Z518_01519annotation not available (160 aa)
Z518_11256annotation not available (642 aa)
Z518_10265Belongs to the RNR ribonuclease family. (1005 aa)
Z518_10351annotation not available (590 aa)
Z518_10577Tyrosine--tRNA ligase. (602 aa)
Z518_10643Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1095 aa)
Z518_10668annotation not available (50 aa)
Z518_09838annotation not available (666 aa)
Z518_10149annotation not available (794 aa)
Z518_10204Belongs to the DEAD box helicase family. (509 aa)
Z518_09113annotation not available (911 aa)
Z518_09199annotation not available (982 aa)
Z518_09349annotation not available (762 aa)
Z518_09444annotation not available (133 aa)
Z518_09540annotation not available (368 aa)
Z518_08202annotation not available (436 aa)
Z518_08274annotation not available (541 aa)
Z518_07266annotation not available (116 aa)
Z518_05185Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (781 aa)
Z518_05216annotation not available (310 aa)
Z518_05256annotation not available (274 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
Z518_05749annotation not available (684 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (119 aa)
Z518_06385annotation not available (731 aa)
Z518_03785U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (577 aa)
Z518_03861annotation not available (668 aa)
Z518_03977annotation not available (476 aa)
Z518_04052annotation not available (404 aa)
Z518_04749annotation not available (273 aa)
Z518_01846annotation not available (608 aa)
Z518_02547annotation not available (864 aa)
Z518_02934annotation not available (258 aa)
Z518_03159annotation not available (507 aa)
Z518_03380annotation not available (366 aa)
Z518_00216annotation not available (369 aa)
Z518_00533annotation not available (363 aa)
Z518_00613Cleavage and polyadenylation specificity factor subunit 2. (962 aa)
Z518_00959annotation not available (321 aa)
Z518_00994annotation not available (480 aa)
Z518_01124annotation not available (312 aa)
Z518_01129annotation not available (296 aa)
Z518_01184annotation not available (131 aa)
Z518_01199annotation not available (319 aa)
Z518_01520annotation not available (106 aa)
Z518_01647annotation not available (182 aa)
Z518_11076annotation not available (138 aa)
Z518_11106annotation not available (374 aa)
Z518_10856annotation not available (183 aa)
Z518_10251annotation not available (171 aa)
Z518_10286annotation not available (249 aa)
Z518_10443annotation not available (1181 aa)
Z518_09659annotation not available (1289 aa)
Z518_09704Splicing factor subunit; Belongs to the SF3B5 family. (85 aa)
Z518_09969annotation not available (197 aa)
Z518_11028annotation not available (225 aa)
Z518_11038annotation not available (677 aa)
Z518_08188Small nuclear ribonucleoprotein G. (80 aa)
Z518_11073annotation not available (607 aa)
Z518_10848Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (84 aa)
Z518_10858annotation not available (830 aa)
Z518_08455annotation not available (404 aa)
Z518_10596annotation not available (812 aa)
Z518_06996annotation not available (591 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1178 aa)
Z518_07472annotation not available (655 aa)
Z518_07482annotation not available (489 aa)
Z518_09267annotation not available (949 aa)
Z518_09558annotation not available (1361 aa)
Z518_08210annotation not available (443 aa)
Z518_08292annotation not available (313 aa)
Z518_05896annotation not available (238 aa)
Z518_05991annotation not available (570 aa)
Z518_08603annotation not available (161 aa)
Z518_08784annotation not available (611 aa)
Z518_08824annotation not available (243 aa)
Z518_06331annotation not available (264 aa)
Z518_06953Belongs to the DEAD box helicase family. (609 aa)
Z518_07224annotation not available (560 aa)
Z518_07239annotation not available (331 aa)
Z518_04148annotation not available (732 aa)
Z518_07454Nuclear cap-binding protein subunit 2. (178 aa)
Z518_04710Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1405 aa)
Z518_07755annotation not available (661 aa)
Z518_05269annotation not available (212 aa)
Z518_05531annotation not available (516 aa)
Z518_02317annotation not available (380 aa)
Z518_05863annotation not available (291 aa)
Z518_02704annotation not available (609 aa)
Z518_02709annotation not available (1079 aa)
Z518_02744annotation not available (731 aa)
Z518_06273annotation not available (520 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (189 aa)
Z518_11367annotation not available (306 aa)
Z518_04010annotation not available (260 aa)
Z518_11122annotation not available (790 aa)
Z518_04055annotation not available (342 aa)
Z518_10702Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
Z518_00192annotation not available (281 aa)
Z518_10797annotation not available (239 aa)
Z518_10832annotation not available (247 aa)
Z518_04417annotation not available (68 aa)
Z518_04437annotation not available (237 aa)
Z518_04442annotation not available (544 aa)
Z518_00725annotation not available (329 aa)
Z518_04777annotation not available (209 aa)
Z518_04782annotation not available (722 aa)
Z518_10600annotation not available (566 aa)
Z518_04897annotation not available (462 aa)
Z518_04977annotation not available (589 aa)
Z518_09715annotation not available (184 aa)
Z518_01075annotation not available (210 aa)
Z518_09770annotation not available (1232 aa)
Z518_02044annotation not available (559 aa)
Z518_01401annotation not available (368 aa)
Z518_02395annotation not available (135 aa)
Z518_02405annotation not available (1211 aa)
Z518_10066annotation not available (168 aa)
Z518_10141annotation not available (412 aa)
Z518_01597annotation not available (331 aa)
Z518_02565annotation not available (966 aa)
Z518_09015annotation not available (977 aa)
Z518_02972annotation not available (103 aa)
Z518_02977annotation not available (197 aa)
Z518_09321annotation not available (152 aa)
CLP1mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (507 aa)
Z518_08079annotation not available (336 aa)
Z518_08401annotation not available (2223 aa)
Z518_00606annotation not available (2312 aa)
Z518_08758annotation not available (409 aa)
Z518_00872annotation not available (1012 aa)
Z518_06580annotation not available (755 aa)
Z518_066865'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1043 aa)
Z518_06777annotation not available (212 aa)
Z518_06952annotation not available (216 aa)
Z518_01202annotation not available (441 aa)
Z518_07288annotation not available (622 aa)
Z518_07298annotation not available (295 aa)
Z518_01574annotation not available (835 aa)
Z518_07473annotation not available (947 aa)
Z518_01720annotation not available (670 aa)
Z518_07814annotation not available (1159 aa)
Z518_05218annotation not available (364 aa)
Z518_05233annotation not available (1691 aa)
Z518_05806annotation not available (401 aa)
Z518_06017annotation not available (486 aa)
Z518_06187Belongs to the cyclin family. (399 aa)
Z518_03782annotation not available (296 aa)
Z518_03989annotation not available (475 aa)
Z518_04144annotation not available (343 aa)
Z518_04346annotation not available (1228 aa)
Z518_04901annotation not available (585 aa)
Z518_01843annotation not available (288 aa)
Z518_02258annotation not available (300 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (652 aa)
Z518_02534annotation not available (380 aa)
Z518_02791annotation not available (148 aa)
Z518_03021annotation not available (765 aa)
Z518_03096annotation not available (441 aa)
Z518_03116annotation not available (1225 aa)
Z518_03251annotation not available (860 aa)
Z518_03552annotation not available (614 aa)
Z518_00028annotation not available (299 aa)
Z518_00178annotation not available (410 aa)
Z518_00193annotation not available (581 aa)
Z518_00479annotation not available (556 aa)
Z518_00796annotation not available (784 aa)
Z518_00841annotation not available (553 aa)
Z518_01086Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (117 aa)
Z518_01171annotation not available (481 aa)
Z518_01296annotation not available (679 aa)
Z518_01573annotation not available (337 aa)
Z518_01734annotation not available (254 aa)
Your Current Organism:
Rhinocladiella mackenziei
NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93
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