(35 nodes) Macroautophagy network (Rhinocladiella mackenziei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z518_01282	annotation not available (394 aa)
	Z518_10749	Phosphatidylinositol 3-kinase VPS34. (940 aa)
	Z518_10148	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy. (498 aa)
	Z518_07340	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily. (924 aa)
	Z518_04853	annotation not available (1287 aa)
	Z518_02280	annotation not available (221 aa)
	Z518_03379	annotation not available (581 aa)
	Z518_08097	Autophagy-related protein 3. (369 aa)
	Z518_06905	annotation not available (1410 aa)
	Z518_07231	annotation not available (219 aa)
	Z518_07581	annotation not available (417 aa)
	Z518_06405	annotation not available (130 aa)
	Z518_04329	annotation not available (229 aa)
	Z518_00161	annotation not available (404 aa)
	Z518_01159	annotation not available (196 aa)
	Z518_08627	annotation not available (532 aa)
	Z518_01662	annotation not available (220 aa)
	Z518_10913	annotation not available (174 aa)
	Z518_10656	annotation not available (146 aa)
	Z518_03751	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (172 aa)
	Z518_05138	Belongs to the AAA ATPase family. (823 aa)
	Z518_05441	annotation not available (781 aa)
	Z518_10822	annotation not available (1677 aa)
	Z518_10474	annotation not available (992 aa)
	Z518_00865	Belongs to the CTL (choline transporter-like) family. (758 aa)
	Z518_04842	annotation not available (818 aa)
	Z518_08592	Belongs to the small GTPase superfamily. Arf family. (182 aa)
	Z518_01564	annotation not available (245 aa)
	Z518_05490	Belongs to the syntaxin family. (263 aa)
	Z518_05967	annotation not available (270 aa)
	Z518_04356	annotation not available (533 aa)
	Z518_04416	Trafficking protein particle complex subunit BET3. (192 aa)
	Z518_02715	annotation not available (510 aa)
	Z518_03412	annotation not available (764 aa)
	Z518_00013	annotation not available (227 aa)

Your Current Organism:

Rhinocladiella mackenziei

NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z518_00013	Z518_01564	A0A0D2JHX2	A0A0D2J464	annotation not available	annotation not available	0.973
Z518_00013	Z518_03412	A0A0D2JHX2	A0A0D2JHC4	annotation not available	annotation not available	0.978
Z518_00013	Z518_03751	A0A0D2JHX2	A0A0D2IJ62	annotation not available	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.430
Z518_00013	Z518_04329	A0A0D2JHX2	A0A0D2H7H5	annotation not available	annotation not available	0.716
Z518_00013	Z518_04356	A0A0D2JHX2	A0A0D2JB95	annotation not available	annotation not available	0.528
Z518_00013	Z518_04416	A0A0D2JHX2	A0A0D2JBG4	annotation not available	Trafficking protein particle complex subunit BET3.	0.983
Z518_00013	Z518_05138	A0A0D2JHX2	A0A0D2IM85	annotation not available	Belongs to the AAA ATPase family.	0.528
Z518_00013	Z518_05490	A0A0D2JHX2	A0A0D2J6F3	annotation not available	Belongs to the syntaxin family.	0.683
Z518_00013	Z518_06905	A0A0D2JHX2	A0A0D2GYU2	annotation not available	annotation not available	0.478
Z518_00013	Z518_08592	A0A0D2JHX2	A0A0D2J196	annotation not available	Belongs to the small GTPase superfamily. Arf family.	0.763
Z518_00013	Z518_10474	A0A0D2JHX2	A0A0D2IUD0	annotation not available	annotation not available	0.661
Z518_00013	Z518_10913	A0A0D2JHX2	A0A0D2I9R6	annotation not available	annotation not available	0.893
Z518_00161	Z518_04356	A0A0D2HEP1	A0A0D2JB95	annotation not available	annotation not available	0.972
Z518_00161	Z518_05138	A0A0D2HEP1	A0A0D2IM85	annotation not available	Belongs to the AAA ATPase family.	0.981
Z518_00161	Z518_08592	A0A0D2HEP1	A0A0D2J196	annotation not available	Belongs to the small GTPase superfamily. Arf family.	0.511
Z518_01282	Z518_01662	A0A0D2J3C7	A0A0D2HIV1	annotation not available	annotation not available	0.446
Z518_01282	Z518_03751	A0A0D2J3C7	A0A0D2IJ62	annotation not available	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.509
Z518_01282	Z518_04842	A0A0D2J3C7	A0A0D2IUM8	annotation not available	annotation not available	0.534
Z518_01282	Z518_08097	A0A0D2J3C7	A0A0D2GV49	annotation not available	Autophagy-related protein 3.	0.460
Z518_01282	Z518_10148	A0A0D2J3C7	A0A0D2FGG7	annotation not available	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	0.454