7 items (Rhinocladiella mackenziei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z518_11399	annotation not available (285 aa)
	Z518_04356	annotation not available (533 aa)
	Z518_00776	Belongs to the SecY/SEC61-alpha family. (476 aa)
	Z518_08982	annotation not available (465 aa)
	Z518_11400	annotation not available (109 aa)
	Z518_06151	annotation not available (192 aa)
	Z518_05138	Belongs to the AAA ATPase family. (823 aa)

Your Current Organism:

Rhinocladiella mackenziei

NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z518_04356	Z518_06151	A0A0D2JB95	A0A0D2IHL5	annotation not available	annotation not available	0.939
Z518_04356	Z518_08982	A0A0D2JB95	A0A0D2FGV3	annotation not available	annotation not available	0.939
Z518_04356	Z518_11399	A0A0D2JB95	A0A0D2FBD7	annotation not available	annotation not available	0.944
Z518_04356	Z518_11400	A0A0D2JB95	A0A0D2GM00	annotation not available	annotation not available	0.944
Z518_05138	Z518_06151	A0A0D2IM85	A0A0D2IHL5	Belongs to the AAA ATPase family.	annotation not available	0.939
Z518_05138	Z518_08982	A0A0D2IM85	A0A0D2FGV3	Belongs to the AAA ATPase family.	annotation not available	0.952
Z518_05138	Z518_11399	A0A0D2IM85	A0A0D2FBD7	Belongs to the AAA ATPase family.	annotation not available	0.944
Z518_05138	Z518_11400	A0A0D2IM85	A0A0D2GM00	Belongs to the AAA ATPase family.	annotation not available	0.944
Z518_06151	Z518_04356	A0A0D2IHL5	A0A0D2JB95	annotation not available	annotation not available	0.939
Z518_06151	Z518_05138	A0A0D2IHL5	A0A0D2IM85	annotation not available	Belongs to the AAA ATPase family.	0.939
Z518_08982	Z518_04356	A0A0D2FGV3	A0A0D2JB95	annotation not available	annotation not available	0.939
Z518_08982	Z518_05138	A0A0D2FGV3	A0A0D2IM85	annotation not available	Belongs to the AAA ATPase family.	0.952
Z518_11399	Z518_04356	A0A0D2FBD7	A0A0D2JB95	annotation not available	annotation not available	0.944
Z518_11399	Z518_05138	A0A0D2FBD7	A0A0D2IM85	annotation not available	Belongs to the AAA ATPase family.	0.944
Z518_11399	Z518_11400	A0A0D2FBD7	A0A0D2GM00	annotation not available	annotation not available	0.921
Z518_11400	Z518_04356	A0A0D2GM00	A0A0D2JB95	annotation not available	annotation not available	0.944
Z518_11400	Z518_05138	A0A0D2GM00	A0A0D2IM85	annotation not available	Belongs to the AAA ATPase family.	0.944
Z518_11400	Z518_11399	A0A0D2GM00	A0A0D2FBD7	annotation not available	annotation not available	0.921