(17 nodes) Cytoplasmic side of plasma membrane network (Rhinocladiella mackenziei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z518_10366	annotation not available (646 aa)
	Z518_08206	annotation not available (591 aa)
	Z518_02280	annotation not available (221 aa)
	Z518_07927	annotation not available (643 aa)
	Z518_06865	annotation not available (100 aa)
	Z518_07231	annotation not available (219 aa)
	Z518_06175	annotation not available (630 aa)
	Z518_06375	annotation not available (353 aa)
	Z518_10463	annotation not available (765 aa)
	Z518_05564	annotation not available (794 aa)
	Z518_06536	annotation not available (1001 aa)
	Z518_03766	annotation not available (787 aa)
	Z518_02915	annotation not available (353 aa)
	Z518_03713	annotation not available (357 aa)
	Z518_10757	annotation not available (402 aa)
	Z518_01388	annotation not available (630 aa)
	Z518_00645	annotation not available (646 aa)

Your Current Organism:

Rhinocladiella mackenziei

NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93

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Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z518_02280	Z518_06865	A0A0D2FZB5	A0A0D2GYP3	annotation not available	annotation not available	0.862
Z518_02915	Z518_03713	A0A0D2IQM1	A0A0D2IRF4	annotation not available	annotation not available	0.974
Z518_02915	Z518_06375	A0A0D2IQM1	A0A0D2H543	annotation not available	annotation not available	0.963
Z518_02915	Z518_08206	A0A0D2IQM1	A0A0D2FJW7	annotation not available	annotation not available	0.963
Z518_03713	Z518_02915	A0A0D2IRF4	A0A0D2IQM1	annotation not available	annotation not available	0.974
Z518_03713	Z518_06375	A0A0D2IRF4	A0A0D2H543	annotation not available	annotation not available	0.769
Z518_06375	Z518_02915	A0A0D2H543	A0A0D2IQM1	annotation not available	annotation not available	0.963
Z518_06375	Z518_03713	A0A0D2H543	A0A0D2IRF4	annotation not available	annotation not available	0.769
Z518_06865	Z518_02280	A0A0D2GYP3	A0A0D2FZB5	annotation not available	annotation not available	0.862
Z518_06865	Z518_07231	A0A0D2GYP3	A0A0D2GZQ9	annotation not available	annotation not available	0.862
Z518_07231	Z518_06865	A0A0D2GZQ9	A0A0D2GYP3	annotation not available	annotation not available	0.862
Z518_08206	Z518_02915	A0A0D2FJW7	A0A0D2IQM1	annotation not available	annotation not available	0.963