(25 nodes) Nuclear body network (Rhinocladiella mackenziei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z518_04991	Phosphoinositide phospholipase C. (590 aa)
	Z518_10561	annotation not available (646 aa)
	Z518_09233	Phosphoinositide phospholipase C. (670 aa)
	Z518_06789	annotation not available (214 aa)
	Z518_02010	annotation not available (452 aa)
	Z518_02651	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (605 aa)
	Z518_09113	annotation not available (911 aa)
	Z518_07556	annotation not available (1895 aa)
	Z518_03785	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (577 aa)
	Z518_03836	annotation not available (987 aa)
	Z518_03987	annotation not available (278 aa)
	Z518_10896	annotation not available (680 aa)
	Z518_09969	annotation not available (197 aa)
	Z518_09481	annotation not available (337 aa)
	Z518_08495	annotation not available (625 aa)
	Z518_05247	annotation not available (1187 aa)
	Z518_08282	annotation not available (813 aa)
	Z518_06426	Phosphoinositide phospholipase C. (1109 aa)
	Z518_07544	annotation not available (727 aa)
	Z518_02022	annotation not available (763 aa)
	Z518_01597	annotation not available (331 aa)
	Z518_00952	annotation not available (2181 aa)
	Z518_05380	annotation not available (203 aa)
	Z518_05455	annotation not available (815 aa)
	Z518_01216	annotation not available (1388 aa)

Your Current Organism:

Rhinocladiella mackenziei

NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z518_01216	Z518_02010	A0A0D2JKZ1	A0A0D2FYG5	annotation not available	annotation not available	0.740
Z518_01216	Z518_02651	A0A0D2JKZ1	A0A0D2G0H2	annotation not available	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.940
Z518_01216	Z518_05380	A0A0D2JKZ1	A0A0D2J666	annotation not available	annotation not available	0.648
Z518_01216	Z518_09113	A0A0D2JKZ1	A0A0D2GSN9	annotation not available	annotation not available	0.617
Z518_01216	Z518_10561	A0A0D2JKZ1	A0A0D2FED8	annotation not available	annotation not available	0.736
Z518_01597	Z518_02010	A0A0D2IX10	A0A0D2FYG5	annotation not available	annotation not available	0.570
Z518_01597	Z518_03785	A0A0D2IX10	A0A0D2H5X7	annotation not available	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.433
Z518_01597	Z518_05380	A0A0D2IX10	A0A0D2J666	annotation not available	annotation not available	0.633
Z518_01597	Z518_09969	A0A0D2IX10	A0A0D2I520	annotation not available	annotation not available	0.569
Z518_01597	Z518_10561	A0A0D2IX10	A0A0D2FED8	annotation not available	annotation not available	0.400
Z518_02010	Z518_01216	A0A0D2FYG5	A0A0D2JKZ1	annotation not available	annotation not available	0.740
Z518_02010	Z518_01597	A0A0D2FYG5	A0A0D2IX10	annotation not available	annotation not available	0.570
Z518_02010	Z518_02651	A0A0D2FYG5	A0A0D2G0H2	annotation not available	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.910
Z518_02010	Z518_03785	A0A0D2FYG5	A0A0D2H5X7	annotation not available	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.554
Z518_02010	Z518_05380	A0A0D2FYG5	A0A0D2J666	annotation not available	annotation not available	0.727
Z518_02010	Z518_09113	A0A0D2FYG5	A0A0D2GSN9	annotation not available	annotation not available	0.704
Z518_02010	Z518_09969	A0A0D2FYG5	A0A0D2I520	annotation not available	annotation not available	0.613
Z518_02010	Z518_10561	A0A0D2FYG5	A0A0D2FED8	annotation not available	annotation not available	0.862
Z518_02651	Z518_01216	A0A0D2G0H2	A0A0D2JKZ1	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	annotation not available	0.940
Z518_02651	Z518_02010	A0A0D2G0H2	A0A0D2FYG5	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	annotation not available	0.910