6 items (Rhinocladiella mackenziei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z518_07288	annotation not available (622 aa)
	Z518_02946	annotation not available (893 aa)
	Z518_01574	annotation not available (835 aa)
	Z518_07454	Nuclear cap-binding protein subunit 2. (178 aa)
	Z518_01124	annotation not available (312 aa)
	Z518_07248	annotation not available (424 aa)

Your Current Organism:

Rhinocladiella mackenziei

NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z518_01124	Z518_01574	A0A0D2HHE0	A0A0D2J479	annotation not available	annotation not available	0.570
Z518_01124	Z518_02946	A0A0D2HHE0	A0A0D2JG30	annotation not available	annotation not available	0.983
Z518_01574	Z518_01124	A0A0D2J479	A0A0D2HHE0	annotation not available	annotation not available	0.570
Z518_01574	Z518_07288	A0A0D2J479	A0A0D2J410	annotation not available	annotation not available	0.732
Z518_01574	Z518_07454	A0A0D2J479	A0A0D2IL18	annotation not available	Nuclear cap-binding protein subunit 2.	0.999
Z518_02946	Z518_01124	A0A0D2JG30	A0A0D2HHE0	annotation not available	annotation not available	0.983
Z518_07288	Z518_01574	A0A0D2J410	A0A0D2J479	annotation not available	annotation not available	0.732
Z518_07288	Z518_07454	A0A0D2J410	A0A0D2IL18	annotation not available	Nuclear cap-binding protein subunit 2.	0.741
Z518_07454	Z518_01574	A0A0D2IL18	A0A0D2J479	Nuclear cap-binding protein subunit 2.	annotation not available	0.999
Z518_07454	Z518_07288	A0A0D2IL18	A0A0D2J410	Nuclear cap-binding protein subunit 2.	annotation not available	0.741