17 items (Rhinocladiella mackenziei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z518_04801	annotation not available (799 aa)
	Z518_01267	annotation not available (657 aa)
	Z518_05164	annotation not available (608 aa)
	Z518_05352	annotation not available (522 aa)
	Z518_10084	annotation not available (1089 aa)
	Z518_07326	annotation not available (582 aa)
	Z518_07596	annotation not available (560 aa)
	Z518_04027	Lysine--tRNA ligase. (624 aa)
	Z518_05015	annotation not available (794 aa)
	Z518_11128	annotation not available (549 aa)
	Z518_08641	annotation not available (514 aa)
	Z518_06684	annotation not available (490 aa)
	Z518_03235	annotation not available (576 aa)
	Z518_09870	annotation not available (366 aa)
	Z518_01436	annotation not available (486 aa)
	Z518_09487	annotation not available (951 aa)
	Z518_00450	annotation not available (1463 aa)

Your Current Organism:

Rhinocladiella mackenziei

NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z518_00450	Z518_01436	A0A0D2J100	A0A0D2IWG7	annotation not available	annotation not available	0.419
Z518_00450	Z518_04027	A0A0D2J100	A0A0D2H6P2	annotation not available	Lysine--tRNA ligase.	0.559
Z518_00450	Z518_04801	A0A0D2J100	A0A0D2JCI5	annotation not available	annotation not available	0.519
Z518_00450	Z518_05015	A0A0D2J100	A0A0D2H989	annotation not available	annotation not available	0.753
Z518_00450	Z518_06684	A0A0D2J100	A0A0D2IBC9	annotation not available	annotation not available	0.419
Z518_00450	Z518_07596	A0A0D2J100	A0A0D2H0U2	annotation not available	annotation not available	0.469
Z518_00450	Z518_08641	A0A0D2J100	A0A0D2I9X4	annotation not available	annotation not available	0.860
Z518_00450	Z518_09870	A0A0D2J100	A0A0D2IVS8	annotation not available	annotation not available	0.444
Z518_01267	Z518_01436	A0A0D2J3B8	A0A0D2IWG7	annotation not available	annotation not available	0.831
Z518_01267	Z518_03235	A0A0D2J3B8	A0A0D2IRI4	annotation not available	annotation not available	0.832
Z518_01267	Z518_04027	A0A0D2J3B8	A0A0D2H6P2	annotation not available	Lysine--tRNA ligase.	0.750
Z518_01267	Z518_04801	A0A0D2J3B8	A0A0D2JCI5	annotation not available	annotation not available	0.507
Z518_01267	Z518_05015	A0A0D2J3B8	A0A0D2H989	annotation not available	annotation not available	0.440
Z518_01267	Z518_05164	A0A0D2J3B8	A0A0D2FQ08	annotation not available	annotation not available	0.686
Z518_01267	Z518_05352	A0A0D2J3B8	A0A0D2FQM8	annotation not available	annotation not available	0.617
Z518_01267	Z518_06684	A0A0D2J3B8	A0A0D2IBC9	annotation not available	annotation not available	0.832
Z518_01267	Z518_07326	A0A0D2J3B8	A0A0D2GZZ9	annotation not available	annotation not available	0.784
Z518_01267	Z518_07596	A0A0D2J3B8	A0A0D2H0U2	annotation not available	annotation not available	0.622
Z518_01267	Z518_08641	A0A0D2J3B8	A0A0D2I9X4	annotation not available	annotation not available	0.622
Z518_01267	Z518_09487	A0A0D2J3B8	A0A0D2IYR1	annotation not available	annotation not available	0.695