(99 nodes) Zinc finger, RING/FYVE/PHD-type network (Rhinocladiella mackenziei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z518_01186	annotation not available (124 aa)
	Z518_00344	RBR-type E3 ubiquitin transferase. (715 aa)
	Z518_03397	annotation not available (612 aa)
	Z518_03191	annotation not available (1162 aa)
	Z518_02715	annotation not available (510 aa)
	Z518_02183	annotation not available (1380 aa)
	Z518_02068	annotation not available (305 aa)
	Z518_04901	annotation not available (585 aa)
	Z518_04896	annotation not available (490 aa)
	Z518_04441	annotation not available (907 aa)
	Z518_03964	annotation not available (1687 aa)
	Z518_05405	annotation not available (652 aa)
	Z518_05152	annotation not available (466 aa)
	Z518_07343	annotation not available (205 aa)
	Z518_01077	annotation not available (1548 aa)
	Z518_01017	annotation not available (954 aa)
	Z518_08763	annotation not available (512 aa)
	Z518_08717	annotation not available (311 aa)
	Z518_00536	annotation not available (591 aa)
	Z518_08174	annotation not available (490 aa)
	Z518_03448	annotation not available (761 aa)
	Z518_03408	annotation not available (486 aa)
	Z518_03272	annotation not available (1041 aa)
	Z518_09391	annotation not available (1126 aa)
	Z518_02565	annotation not available (966 aa)
	Z518_01547	annotation not available (514 aa)
	Z518_10005	RBR-type E3 ubiquitin transferase. (1050 aa)
	Z518_02134	annotation not available (447 aa)
	Z518_09860	RBR-type E3 ubiquitin transferase. (629 aa)
	Z518_04572	annotation not available (1427 aa)
	Z518_04557	annotation not available (290 aa)
	Z518_10292	annotation not available (832 aa)
	Z518_04497	annotation not available (1751 aa)
	Z518_10977	E3 ubiquitin-protein ligase PEP5. (980 aa)
	Z518_00032	annotation not available (1509 aa)
	Z518_04070	Ubiquitin carboxyl-terminal hydrolase. (790 aa)
	Z518_03195	annotation not available (434 aa)
	Z518_03140	annotation not available (577 aa)
	Z518_06068	Chromatin modification-related protein. (740 aa)
	Z518_02533	annotation not available (266 aa)
	Z518_01842	annotation not available (521 aa)
	Z518_05046	annotation not available (961 aa)
	Z518_07775	annotation not available (697 aa)
	Z518_07700	annotation not available (716 aa)
	Z518_04525	E3 ubiquitin protein ligase. (706 aa)
	Z518_07329	annotation not available (1115 aa)
	Z518_04219	annotation not available (785 aa)
	Z518_03988	annotation not available (862 aa)
	Z518_06848	annotation not available (442 aa)
	Z518_06526	annotation not available (601 aa)
	Z518_08542	annotation not available (985 aa)
	Z518_05775	annotation not available (712 aa)
	Z518_08282	annotation not available (813 aa)
	Z518_08160	annotation not available (234 aa)
	Z518_08110	annotation not available (284 aa)
	Z518_09277	annotation not available (921 aa)
	Z518_07472	annotation not available (655 aa)
	Z518_07432	annotation not available (475 aa)
	Z518_07387	annotation not available (381 aa)
	Z518_10197	annotation not available (471 aa)
	Z518_08395	annotation not available (320 aa)
	Z518_11063	annotation not available (475 aa)
	Z518_08989	annotation not available (434 aa)
	Z518_11060	annotation not available (260 aa)
	Z518_00959	annotation not available (321 aa)
	Z518_00744	annotation not available (1767 aa)
	Z518_02387	Chromatin modification-related protein. (450 aa)
	Z518_02316	annotation not available (1075 aa)
	Z518_05080	annotation not available (2456 aa)
	Z518_05025	annotation not available (522 aa)
	Z518_03846	annotation not available (1133 aa)
	Z518_03836	annotation not available (987 aa)
	Z518_06345	annotation not available (385 aa)
	Z518_05523	annotation not available (927 aa)
	Z518_07496	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane. (705 aa)
	Z518_09334	annotation not available (817 aa)
	Z518_10034	Belongs to the peptidase C19 family. (536 aa)
	Z518_09808	RBR-type E3 ubiquitin transferase. (512 aa)
	SLX1	Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (416 aa)
	Z518_00622	annotation not available (366 aa)
	Z518_00130	annotation not available (702 aa)
	Z518_00015	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (463 aa)
	Z518_03389	annotation not available (476 aa)
	Z518_02993	annotation not available (244 aa)
	Z518_02778	annotation not available (1071 aa)
	Z518_02376	annotation not available (924 aa)
	Z518_02235	annotation not available (379 aa)
	Z518_02055	annotation not available (1210 aa)
	Z518_02045	annotation not available (504 aa)
	Z518_03744	annotation not available (465 aa)
	Z518_05295	annotation not available (541 aa)
	Z518_07630	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (1146 aa)
	Z518_07260	annotation not available (1552 aa)
	Z518_07250	annotation not available (1630 aa)
	Z518_07100	annotation not available (1599 aa)
	Z518_09867	annotation not available (410 aa)
	Z518_10571	RBR-type E3 ubiquitin transferase. (331 aa)
	Z518_10259	annotation not available (344 aa)
	Z518_10824	annotation not available (893 aa)

Your Current Organism:

Rhinocladiella mackenziei

NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SLX1	Z518_07630	A0A0D2G4N0	A0A0D2FPH6	Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.537
Z518_00015	Z518_01017	A0A0D2G316	A0A0D2J2P0	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	annotation not available	0.481
Z518_00015	Z518_02055	A0A0D2G316	A0A0D2FYM0	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	annotation not available	0.512
Z518_00015	Z518_02376	A0A0D2G316	A0A0D2FZJ3	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	annotation not available	0.481
Z518_00015	Z518_03191	A0A0D2G316	A0A0D2JGV0	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	annotation not available	0.481
Z518_00015	Z518_03744	A0A0D2G316	A0A0D2FUJ2	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	annotation not available	0.995
Z518_00015	Z518_03964	A0A0D2G316	A0A0D2JA50	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	annotation not available	0.563
Z518_00015	Z518_04557	A0A0D2G316	A0A0D2ITU4	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	annotation not available	0.998
Z518_00015	Z518_04572	A0A0D2G316	A0A0D2ITV4	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	annotation not available	0.480
Z518_00015	Z518_10824	A0A0D2G316	A0A0D2FCT1	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	annotation not available	0.480
Z518_00032	Z518_00744	A0A0D2ISJ9	A0A0D2HG73	annotation not available	annotation not available	0.788
Z518_00032	Z518_01547	A0A0D2ISJ9	A0A0D2IWU4	annotation not available	annotation not available	0.727
Z518_00032	Z518_02316	A0A0D2ISJ9	A0A0D2HB49	annotation not available	annotation not available	0.727
Z518_00032	Z518_03397	A0A0D2ISJ9	A0A0D2JHA6	annotation not available	annotation not available	0.652
Z518_00032	Z518_03964	A0A0D2ISJ9	A0A0D2JA50	annotation not available	annotation not available	0.703
Z518_00032	Z518_05523	A0A0D2ISJ9	A0A0D2H2J3	annotation not available	annotation not available	0.423
Z518_00032	Z518_07630	A0A0D2ISJ9	A0A0D2FPH6	annotation not available	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.672
Z518_00032	Z518_08763	A0A0D2ISJ9	A0A0D2J1P3	annotation not available	annotation not available	0.621
Z518_00032	Z518_10197	A0A0D2ISJ9	A0A0D2ID21	annotation not available	annotation not available	0.621
Z518_00130	Z518_03964	A0A0D2G3D7	A0A0D2JA50	annotation not available	annotation not available	0.400