STRINGSTRING
Z518_11354 Z518_11354 Z518_10371 Z518_10371 Z518_09328 Z518_09328 Z518_07535 Z518_07535 Z518_07806 Z518_07806 Z518_05149 Z518_05149 Z518_00015 Z518_00015 Z518_01454 Z518_01454 Z518_01701 Z518_01701 Z518_10643 Z518_10643 Z518_10079 Z518_10079 Z518_09154 Z518_09154 Z518_07031 Z518_07031 Z518_07101 Z518_07101 Z518_07656 Z518_07656 Z518_05206 Z518_05206 Z518_09689 Z518_09689 Z518_10666 Z518_10666 Z518_06649 Z518_06649 Z518_09046 Z518_09046 Z518_07577 Z518_07577 Z518_07738 Z518_07738 Z518_09327 Z518_09327 Z518_09417 Z518_09417 Z518_07818 Z518_07818 Z518_03988 Z518_03988 Z518_04855 Z518_04855 Z518_02699 Z518_02699 Z518_03015 Z518_03015 Z518_00529 Z518_00529 Z518_04557 Z518_04557 Z518_00900 Z518_00900 Z518_09321 Z518_09321 Z518_00872 Z518_00872 Z518_07513 Z518_07513 Z518_05182 Z518_05182 Z518_05872 Z518_05872 Z518_06187 Z518_06187 Z518_02705 Z518_02705 Z518_02901 Z518_02901 Z518_01086 Z518_01086
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Z518_11354annotation not available (1026 aa)
Z518_10371Belongs to the protein kinase superfamily. (420 aa)
Z518_09328annotation not available (169 aa)
Z518_07535FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (586 aa)
Z518_07806annotation not available (428 aa)
Z518_05149annotation not available (187 aa)
Z518_00015General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (463 aa)
Z518_01454annotation not available (674 aa)
Z518_01701annotation not available (278 aa)
Z518_10643Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1095 aa)
Z518_10079RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (857 aa)
Z518_09154annotation not available (305 aa)
Z518_07031annotation not available (238 aa)
Z518_07101annotation not available (807 aa)
Z518_07656annotation not available (632 aa)
Z518_05206DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
Z518_09689annotation not available (78 aa)
Z518_10666annotation not available (265 aa)
Z518_06649Belongs to the cyclin family. (523 aa)
Z518_09046annotation not available (377 aa)
Z518_07577annotation not available (671 aa)
Z518_07738Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (713 aa)
Z518_09327annotation not available (557 aa)
Z518_09417annotation not available (152 aa)
Z518_07818annotation not available (77 aa)
Z518_03988annotation not available (862 aa)
Z518_04855RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (499 aa)
Z518_02699DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1760 aa)
Z518_03015annotation not available (413 aa)
Z518_00529Belongs to the cyclin family. (383 aa)
Z518_04557annotation not available (290 aa)
Z518_00900annotation not available (848 aa)
Z518_09321annotation not available (152 aa)
Z518_00872annotation not available (1012 aa)
Z518_07513annotation not available (119 aa)
Z518_05182annotation not available (336 aa)
Z518_05872annotation not available (379 aa)
Z518_06187Belongs to the cyclin family. (399 aa)
Z518_02705DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
Z518_02901Belongs to the SKP1 family. (103 aa)
Z518_01086Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (117 aa)
Your Current Organism:
Rhinocladiella mackenziei
NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93
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