(12 nodes) Mixed, incl. PCNA-Dependent Long Patch Base Excision Repair, and Myb domain network (Fonsecaea multimorphosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z520_05256	Uncharacterized protein. (305 aa)
	Z520_10288	Uncharacterized protein. (109 aa)
	Z520_08004	Uncharacterized protein. (409 aa)
	Z520_05592	Uncharacterized protein. (448 aa)
	Z520_10113	Uncharacterized protein. (431 aa)
	Z520_09673	Uncharacterized protein. (84 aa)
	Z520_06540	Uncharacterized protein. (824 aa)
	Z520_09065	Uncharacterized protein. (411 aa)
	Z520_03601	Uncharacterized protein. (402 aa)
	Z520_09049	Uncharacterized protein. (150 aa)
	Z520_00116	Uncharacterized protein. (559 aa)
	Z520_04149	Zds_C domain-containing protein. (930 aa)

Your Current Organism:

Fonsecaea multimorphosa

NCBI taxonomy Id: 1442371
Other names: F. multimorphosa CBS 102226, Fonsecaea multimorphosa CBS 102226

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z520_00116	Z520_03601	A0A0D2KJ06	A0A0D2KCP7	Uncharacterized protein.	Uncharacterized protein.	0.611
Z520_00116	Z520_05256	A0A0D2KJ06	A0A0D2HA91	Uncharacterized protein.	Uncharacterized protein.	0.408
Z520_00116	Z520_06540	A0A0D2KJ06	A0A0D2JW75	Uncharacterized protein.	Uncharacterized protein.	0.475
Z520_00116	Z520_08004	A0A0D2KJ06	A0A0D2IGN7	Uncharacterized protein.	Uncharacterized protein.	0.611
Z520_00116	Z520_10113	A0A0D2KJ06	A0A0D2JLB8	Uncharacterized protein.	Uncharacterized protein.	0.408
Z520_03601	Z520_00116	A0A0D2KCP7	A0A0D2KJ06	Uncharacterized protein.	Uncharacterized protein.	0.611
Z520_03601	Z520_04149	A0A0D2KCP7	A0A0D2KUS2	Uncharacterized protein.	Zds_C domain-containing protein.	0.611
Z520_03601	Z520_05592	A0A0D2KCP7	A0A0D2IMM5	Uncharacterized protein.	Uncharacterized protein.	0.611
Z520_03601	Z520_09049	A0A0D2KCP7	A0A0D2KEJ4	Uncharacterized protein.	Uncharacterized protein.	0.611
Z520_03601	Z520_09673	A0A0D2KCP7	A0A0D2JMS7	Uncharacterized protein.	Uncharacterized protein.	0.611
Z520_04149	Z520_03601	A0A0D2KUS2	A0A0D2KCP7	Zds_C domain-containing protein.	Uncharacterized protein.	0.611
Z520_04149	Z520_05256	A0A0D2KUS2	A0A0D2HA91	Zds_C domain-containing protein.	Uncharacterized protein.	0.408
Z520_04149	Z520_08004	A0A0D2KUS2	A0A0D2IGN7	Zds_C domain-containing protein.	Uncharacterized protein.	0.611
Z520_04149	Z520_10113	A0A0D2KUS2	A0A0D2JLB8	Zds_C domain-containing protein.	Uncharacterized protein.	0.408
Z520_05256	Z520_00116	A0A0D2HA91	A0A0D2KJ06	Uncharacterized protein.	Uncharacterized protein.	0.408
Z520_05256	Z520_04149	A0A0D2HA91	A0A0D2KUS2	Uncharacterized protein.	Zds_C domain-containing protein.	0.408
Z520_05256	Z520_05592	A0A0D2HA91	A0A0D2IMM5	Uncharacterized protein.	Uncharacterized protein.	0.408
Z520_05256	Z520_09049	A0A0D2HA91	A0A0D2KEJ4	Uncharacterized protein.	Uncharacterized protein.	0.408
Z520_05256	Z520_09673	A0A0D2HA91	A0A0D2JMS7	Uncharacterized protein.	Uncharacterized protein.	0.408
Z520_05256	Z520_10288	A0A0D2HA91	A0A0D2I9W3	Uncharacterized protein.	Uncharacterized protein.	0.589