(40 nodes) Catalytic step 2 spliceosome network (Fonsecaea multimorphosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z520_00659	Pre-mRNA-splicing factor syf1. (853 aa)
	Z520_07364	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
	Z520_06707	RRM domain-containing protein. (154 aa)
	Z520_05856	WD_REPEATS_REGION domain-containing protein. (334 aa)
	Z520_04253	PSP domain-containing protein. (597 aa)
	Z520_03582	Pre-mRNA-splicing factor cwc22. (662 aa)
	Z520_02429	Pre-mRNA-processing-splicing factor 8. (2670 aa)
	Z520_01136	Pre-mRNA-splicing factor slt11. (383 aa)
	Z520_00292	Uncharacterized protein. (990 aa)
	Z520_00412	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (174 aa)
	Z520_11786	PPIase cyclophilin-type domain-containing protein. (567 aa)
	Z520_10258	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1418 aa)
	Z520_07707	Uncharacterized protein. (985 aa)
	Z520_07481	Uncharacterized protein. (446 aa)
	Z520_06444	PPIase cyclophilin-type domain-containing protein. (617 aa)
	Z520_05722	RRM domain-containing protein. (116 aa)
	Z520_02425	Uncharacterized protein. (547 aa)
	Z520_01709	SF3b1 domain-containing protein. (1230 aa)
	Z520_09813	Matrin-type domain-containing protein. (238 aa)
	Z520_09068	Pre-mRNA-splicing factor clf1. (680 aa)
	Z520_12045	Uncharacterized protein. (302 aa)
	Z520_08179	Uncharacterized protein. (214 aa)
	Z520_07058	Uncharacterized protein. (331 aa)
	Z520_07283	Uncharacterized protein. (563 aa)
	Z520_03373	Small nuclear ribonucleoprotein G. (80 aa)
	Z520_06174	Sm domain-containing protein. (93 aa)
	Z520_05670	Uncharacterized protein. (205 aa)
	Z520_03055	WD_REPEATS_REGION domain-containing protein. (360 aa)
	Z520_05385	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	Z520_02481	Sm domain-containing protein. (137 aa)
	Z520_01103	Uncharacterized protein. (207 aa)
	Z520_01183	Uncharacterized protein. (288 aa)
	Z520_10956	Sm domain-containing protein. (256 aa)
	Z520_00544	Small nuclear ribonucleoprotein Sm D2. (103 aa)
	Z520_08378	WD_REPEATS_REGION domain-containing protein. (590 aa)
	Z520_07548	Uncharacterized protein. (484 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	Z520_05044	Uncharacterized protein. (307 aa)
	Z520_00265	Tr-type G domain-containing protein. (982 aa)
	Z520_00525	Pre-mRNA-splicing factor prp46. (436 aa)

Your Current Organism:

Fonsecaea multimorphosa

NCBI taxonomy Id: 1442371
Other names: F. multimorphosa CBS 102226, Fonsecaea multimorphosa CBS 102226

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	Z520_00265	A0A0D2KK16	A0A0D2L3E3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Tr-type G domain-containing protein.	0.986
LSM3	Z520_00412	A0A0D2KK16	A0A0D2HPF8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.422
LSM3	Z520_00525	A0A0D2KK16	A0A0D2L434	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-splicing factor prp46.	0.485
LSM3	Z520_00544	A0A0D2KK16	A0A0D2KCI5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.996
LSM3	Z520_00659	A0A0D2KK16	A0A0D2J3K9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-splicing factor syf1.	0.406
LSM3	Z520_01136	A0A0D2KK16	A0A0D2HL67	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-splicing factor slt11.	0.646
LSM3	Z520_01709	A0A0D2KK16	A0A0D2J1G8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	SF3b1 domain-containing protein.	0.915
LSM3	Z520_02429	A0A0D2KK16	A0A0D2HK66	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-processing-splicing factor 8.	0.987
LSM3	Z520_02481	A0A0D2KK16	A0A0D2K8E1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
LSM3	Z520_03055	A0A0D2KK16	A0A0D2K6M5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD_REPEATS_REGION domain-containing protein.	0.670
LSM3	Z520_03373	A0A0D2KK16	A0A0D2K4G1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.992
LSM3	Z520_04253	A0A0D2KK16	A0A0D2HCI8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PSP domain-containing protein.	0.919
LSM3	Z520_05385	A0A0D2KK16	A0A0D2K732	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	Z520_05670	A0A0D2KK16	A0A0D2K5G2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.651
LSM3	Z520_05722	A0A0D2KK16	A0A0D2IN53	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RRM domain-containing protein.	0.764
LSM3	Z520_06174	A0A0D2KK16	A0A0D2K4J6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.992
LSM3	Z520_07283	A0A0D2KK16	A0A0D2K293	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.940
LSM3	Z520_07707	A0A0D2KK16	A0A0D2IHE5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.971
LSM3	Z520_08179	A0A0D2KK16	A0A0D2JZE3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.588
LSM3	Z520_09068	A0A0D2KK16	A0A0D2JP67	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-splicing factor clf1.	0.951