(12 nodes) Mixed, incl. Arrestin-like, C-terminal, and Transferrin receptor-like dimerisation domain network (Colletotrichum fioriniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CFIO01_12790	PA domain-containing protein. (796 aa)
	CFIO01_08220	Arrestin. (634 aa)
	CFIO01_12901	PA domain-containing protein. (910 aa)
	CFIO01_06197	WW domain-containing protein. (367 aa)
	CFIO01_08706	LMBR1 domain-containing protein. (514 aa)
	CFIO01_11062	Arrestin. (555 aa)
	CFIO01_03237	CreD. (341 aa)
	CFIO01_01755	Uncharacterized protein. (347 aa)
	CFIO01_04488	Plasma membrane proteolipid 3. (57 aa)
	CFIO01_05508	Uncharacterized protein. (127 aa)
	CFIO01_12098	E3 ubiquitin-protein ligase. (814 aa)
	CFIO01_07180	Arrestin domain-containing protein. (918 aa)

Your Current Organism:

Colletotrichum fioriniae

NCBI taxonomy Id: 1445577
Other names: C. fioriniae PJ7, Colletotrichum fioriniae PJ7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CFIO01_01755	CFIO01_05508	A0A010RXU2	A0A010S797	Uncharacterized protein.	Uncharacterized protein.	0.594
CFIO01_01755	CFIO01_06197	A0A010RXU2	A0A010RD27	Uncharacterized protein.	WW domain-containing protein.	0.535
CFIO01_01755	CFIO01_12098	A0A010RXU2	A0A010S8F5	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.689
CFIO01_01755	CFIO01_12901	A0A010RXU2	A0A010R875	Uncharacterized protein.	PA domain-containing protein.	0.625
CFIO01_03237	CFIO01_12098	A0A010RX44	A0A010S8F5	CreD.	E3 ubiquitin-protein ligase.	0.593
CFIO01_04488	CFIO01_05508	A0A010S0S4	A0A010S797	Plasma membrane proteolipid 3.	Uncharacterized protein.	0.655
CFIO01_04488	CFIO01_12098	A0A010S0S4	A0A010S8F5	Plasma membrane proteolipid 3.	E3 ubiquitin-protein ligase.	0.655
CFIO01_05508	CFIO01_01755	A0A010S797	A0A010RXU2	Uncharacterized protein.	Uncharacterized protein.	0.594
CFIO01_05508	CFIO01_04488	A0A010S797	A0A010S0S4	Uncharacterized protein.	Plasma membrane proteolipid 3.	0.655
CFIO01_05508	CFIO01_07180	A0A010S797	A0A010S907	Uncharacterized protein.	Arrestin domain-containing protein.	0.504
CFIO01_05508	CFIO01_08706	A0A010S797	A0A010RGQ1	Uncharacterized protein.	LMBR1 domain-containing protein.	0.693
CFIO01_06197	CFIO01_01755	A0A010RD27	A0A010RXU2	WW domain-containing protein.	Uncharacterized protein.	0.535
CFIO01_06197	CFIO01_08706	A0A010RD27	A0A010RGQ1	WW domain-containing protein.	LMBR1 domain-containing protein.	0.416
CFIO01_07180	CFIO01_05508	A0A010S907	A0A010S797	Arrestin domain-containing protein.	Uncharacterized protein.	0.504
CFIO01_07180	CFIO01_08706	A0A010S907	A0A010RGQ1	Arrestin domain-containing protein.	LMBR1 domain-containing protein.	0.652
CFIO01_07180	CFIO01_12098	A0A010S907	A0A010S8F5	Arrestin domain-containing protein.	E3 ubiquitin-protein ligase.	0.609
CFIO01_08220	CFIO01_12098	A0A010QV67	A0A010S8F5	Arrestin.	E3 ubiquitin-protein ligase.	0.715
CFIO01_08706	CFIO01_05508	A0A010RGQ1	A0A010S797	LMBR1 domain-containing protein.	Uncharacterized protein.	0.693
CFIO01_08706	CFIO01_06197	A0A010RGQ1	A0A010RD27	LMBR1 domain-containing protein.	WW domain-containing protein.	0.416
CFIO01_08706	CFIO01_07180	A0A010RGQ1	A0A010S907	LMBR1 domain-containing protein.	Arrestin domain-containing protein.	0.652