(48 nodes) RNA polymerase, and RNA polymerase core enzyme binding network (Colletotrichum fioriniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CFIO01_08353	HMG box protein. (332 aa)
	CFIO01_08417	Brf1-like TBP-binding domain-containing protein. (732 aa)
	CFIO01_07580	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (123 aa)
	CFIO01_02884	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (110 aa)
	CFIO01_00507	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	CFIO01_06903	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (127 aa)
	CFIO01_12573	Rtr1/RPAP2 family protein. (299 aa)
	CFIO01_03757	RNA polymerase I specific transcription initiation factor RRN3. (686 aa)
	CFIO01_05351	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (396 aa)
	CFIO01_09589	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1041 aa)
	CFIO01_07642	RNA polymerase N/8 kDa subunit. (132 aa)
	CFIO01_05269	RNA polymerase M/15 kDa subunit. (198 aa)
	CFIO01_10280	Tetratricopeptide. (1221 aa)
	CFIO01_11672	RNA polymerase Rpb7-like domain-containing protein. (488 aa)
	CFIO01_01388	Uncharacterized protein. (576 aa)
	CFIO01_11308	DNA-directed RNA polymerase III complex subunit Rpc37. (396 aa)
	CFIO01_11603	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1750 aa)
	CFIO01_11818	RNA_pol_L_2 domain-containing protein. (140 aa)
	CFIO01_01416	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1225 aa)
	CFIO01_05388	Cdc73 family RNA pol II accessory factor. (623 aa)
	CFIO01_10232	Uncharacterized protein. (401 aa)
	CFIO01_01733	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (836 aa)
	CFIO01_04954	RNA polymerase Rpb3/RpoA insert domain-containing protein. (372 aa)
	CFIO01_05489	RNA polymerase III subunit C17. (150 aa)
	CFIO01_00429	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1456 aa)
	CFIO01_04474	Plus-3 domain-containing protein. (606 aa)
	CFIO01_11769	RNA polymerase III subunit Rpc25. (197 aa)
	CFIO01_11396	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1258 aa)
	CFIO01_03681	Transcription factor S-II. (159 aa)
	CFIO01_02214	DNA-directed RNA polymerase II subunit RPB7. (171 aa)
	CFIO01_10777	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (569 aa)
	CFIO01_05102	TFIIS N-terminal domain-containing protein. (416 aa)
	CFIO01_04534	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1151 aa)
	CFIO01_03947	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (270 aa)
	CFIO01_00358	DNA directed RNA polymerase. (75 aa)
	CFIO01_05523	FACT complex subunit SPT16. (1031 aa)
	CFIO01_05533	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1411 aa)
	CFIO01_03355	RNA polymerase Rpb6. (153 aa)
	CFIO01_12874	RNA polymerase Rpb3/RpoA insert domain-containing protein. (339 aa)
	CFIO01_07305	RNA polymerase Rpb4. (144 aa)
	CFIO01_11960	SAP30_Sin3_bdg domain-containing protein. (180 aa)
	CFIO01_09936	Myb-like DNA-binding domain-containing protein. (630 aa)
	CFIO01_13182	Transcription elongation factor S-II. (302 aa)
	CFIO01_03122	A49-like RNA polymerase I associated factor. (441 aa)
	CFIO01_03147	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1704 aa)
	CFIO01_10814	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (657 aa)
	CFIO01_10039	Uncharacterized protein. (464 aa)
	CFIO01_13737	RNA polymerase Rpb5 domain-containing protein. (230 aa)

Your Current Organism:

Colletotrichum fioriniae

NCBI taxonomy Id: 1445577
Other names: C. fioriniae PJ7, Colletotrichum fioriniae PJ7

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CFIO01_00358	CFIO01_00429	A0A010S1E7	A0A010RDV0	DNA directed RNA polymerase.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995
CFIO01_00358	CFIO01_00507	A0A010S1E7	A0A010Q869	DNA directed RNA polymerase.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
CFIO01_00358	CFIO01_01388	A0A010S1E7	A0A010QSM7	DNA directed RNA polymerase.	Uncharacterized protein.	0.947
CFIO01_00358	CFIO01_01416	A0A010S1E7	A0A010R366	DNA directed RNA polymerase.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
CFIO01_00358	CFIO01_01733	A0A010S1E7	A0A010RA64	DNA directed RNA polymerase.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.821
CFIO01_00358	CFIO01_02214	A0A010S1E7	A0A010RWQ6	DNA directed RNA polymerase.	DNA-directed RNA polymerase II subunit RPB7.	0.999
CFIO01_00358	CFIO01_02884	A0A010S1E7	A0A010Q613	DNA directed RNA polymerase.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.997
CFIO01_00358	CFIO01_03122	A0A010S1E7	A0A010SBQ4	DNA directed RNA polymerase.	A49-like RNA polymerase I associated factor.	0.995
CFIO01_00358	CFIO01_03147	A0A010S1E7	A0A010SBS7	DNA directed RNA polymerase.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
CFIO01_00358	CFIO01_03355	A0A010S1E7	A0A010S2A0	DNA directed RNA polymerase.	RNA polymerase Rpb6.	0.999
CFIO01_00358	CFIO01_03681	A0A010S1E7	A0A010RNM7	DNA directed RNA polymerase.	Transcription factor S-II.	0.995
CFIO01_00358	CFIO01_03757	A0A010S1E7	A0A010QC09	DNA directed RNA polymerase.	RNA polymerase I specific transcription initiation factor RRN3.	0.975
CFIO01_00358	CFIO01_03947	A0A010S1E7	A0A010S054	DNA directed RNA polymerase.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.976
CFIO01_00358	CFIO01_04474	A0A010S1E7	A0A010RJS4	DNA directed RNA polymerase.	Plus-3 domain-containing protein.	0.858
CFIO01_00358	CFIO01_04534	A0A010S1E7	A0A010RYF9	DNA directed RNA polymerase.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
CFIO01_00358	CFIO01_04954	A0A010S1E7	A0A010RCM2	DNA directed RNA polymerase.	RNA polymerase Rpb3/RpoA insert domain-containing protein.	0.999
CFIO01_00358	CFIO01_05102	A0A010S1E7	A0A010RX03	DNA directed RNA polymerase.	TFIIS N-terminal domain-containing protein.	0.500
CFIO01_00358	CFIO01_05269	A0A010S1E7	A0A010QIY9	DNA directed RNA polymerase.	RNA polymerase M/15 kDa subunit.	0.999
CFIO01_00358	CFIO01_05351	A0A010S1E7	A0A010QG59	DNA directed RNA polymerase.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.986
CFIO01_00358	CFIO01_05388	A0A010S1E7	A0A010R7X8	DNA directed RNA polymerase.	Cdc73 family RNA pol II accessory factor.	0.849