(35 nodes) Actin cortical patch network (Colletotrichum fioriniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CFIO01_13147	Calponin-homology (CH) domain-containing protein. (657 aa)
	CFIO01_05412	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1681 aa)
	CFIO01_09079	Vacuolar protein sorting-associated protein 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (695 aa)
	CFIO01_08771	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1227 aa)
	CFIO01_05687	Coronin; Belongs to the WD repeat coronin family. (603 aa)
	CFIO01_03684	GMF family protein. (142 aa)
	CFIO01_11121	SH3 domain-containing protein. (758 aa)
	CFIO01_08905	Uncharacterized protein. (737 aa)
	CFIO01_07453	UBA/TS-N domain-containing protein. (1259 aa)
	CFIO01_12405	Uncharacterized protein. (1515 aa)
	CFIO01_08006	ARP2/3 complex 20 kDa subunit. (276 aa)
	CFIO01_12574	SH3 domain-containing protein. (1172 aa)
	CFIO01_09390	SLA2. (1050 aa)
	CFIO01_06991	Endonuclease/Exonuclease/phosphatase. (1224 aa)
	CFIO01_00426	Uncharacterized protein. (649 aa)
	CFIO01_02208	Proline-rich. (457 aa)
	CFIO01_11503	WD domain-containing protein. (606 aa)
	CFIO01_07741	Uncharacterized protein. (399 aa)
	CFIO01_12738	Adenylyl cyclase-associated protein; Belongs to the CAP family. (393 aa)
	CFIO01_03449	Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (193 aa)
	CFIO01_08007	RRM domain-containing protein. (808 aa)
	CFIO01_08099	VHS domain-containing protein. (413 aa)
	CFIO01_06345	SH3 domain-containing protein. (414 aa)
	CFIO01_01382	Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks; Belongs to the WD repeat ARPC1 family. (381 aa)
	CFIO01_00543	Uncharacterized protein. (663 aa)
	CFIO01_08145	SH3 domain-containing protein. (1154 aa)
	CFIO01_11675	Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament. (391 aa)
	CFIO01_04022	Hob3. (261 aa)
	CFIO01_05528	BAR domain-containing protein. (434 aa)
	CFIO01_01657	Beta-chimaerin. (775 aa)
	CFIO01_09756	UBA/TS-N domain-containing protein. (706 aa)
	CFIO01_12098	E3 ubiquitin-protein ligase. (814 aa)
	CFIO01_04563	Actin-like protein 3; Belongs to the actin family. (439 aa)
	CFIO01_11328	WH1 domain-containing protein. (892 aa)
	CFIO01_08077	DUF2013 domain-containing protein. (493 aa)

Your Current Organism:

Colletotrichum fioriniae

NCBI taxonomy Id: 1445577
Other names: C. fioriniae PJ7, Colletotrichum fioriniae PJ7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CFIO01_00426	CFIO01_01382	A0A010R6V3	A0A010RRP5	Uncharacterized protein.	Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks; Belongs to the WD repeat ARPC1 family.	0.465
CFIO01_00426	CFIO01_02208	A0A010R6V3	A0A010R8E7	Uncharacterized protein.	Proline-rich.	0.525
CFIO01_00426	CFIO01_04022	A0A010R6V3	A0A010RZH7	Uncharacterized protein.	Hob3.	0.439
CFIO01_00426	CFIO01_04563	A0A010R6V3	A0A010SEV7	Uncharacterized protein.	Actin-like protein 3; Belongs to the actin family.	0.768
CFIO01_00426	CFIO01_05412	A0A010R6V3	A0A010Q4G0	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.405
CFIO01_00426	CFIO01_05528	A0A010R6V3	A0A010S1Z4	Uncharacterized protein.	BAR domain-containing protein.	0.617
CFIO01_00426	CFIO01_05687	A0A010R6V3	A0A010QC91	Uncharacterized protein.	Coronin; Belongs to the WD repeat coronin family.	0.657
CFIO01_00426	CFIO01_07741	A0A010R6V3	A0A010RCR5	Uncharacterized protein.	Uncharacterized protein.	0.465
CFIO01_00426	CFIO01_08145	A0A010R6V3	A0A010RVV0	Uncharacterized protein.	SH3 domain-containing protein.	0.696
CFIO01_00426	CFIO01_08771	A0A010R6V3	A0A010QBJ0	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.708
CFIO01_00426	CFIO01_08905	A0A010R6V3	A0A010QWM6	Uncharacterized protein.	Uncharacterized protein.	0.472
CFIO01_00426	CFIO01_09079	A0A010R6V3	A0A010Q6G0	Uncharacterized protein.	Vacuolar protein sorting-associated protein 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.408
CFIO01_00426	CFIO01_09390	A0A010R6V3	A0A010R1L4	Uncharacterized protein.	SLA2.	0.627
CFIO01_00426	CFIO01_11121	A0A010R6V3	A0A010QT56	Uncharacterized protein.	SH3 domain-containing protein.	0.793
CFIO01_00426	CFIO01_11328	A0A010R6V3	A0A010SF79	Uncharacterized protein.	WH1 domain-containing protein.	0.655
CFIO01_00426	CFIO01_11503	A0A010R6V3	A0A010RBT2	Uncharacterized protein.	WD domain-containing protein.	0.551
CFIO01_00426	CFIO01_11675	A0A010R6V3	A0A010RZ88	Uncharacterized protein.	Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament.	0.771
CFIO01_00426	CFIO01_12738	A0A010R6V3	A0A010REZ5	Uncharacterized protein.	Adenylyl cyclase-associated protein; Belongs to the CAP family.	0.640
CFIO01_00426	CFIO01_13147	A0A010R6V3	A0A010Q1Z3	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.804
CFIO01_00543	CFIO01_04563	A0A010RV82	A0A010SEV7	Uncharacterized protein.	Actin-like protein 3; Belongs to the actin family.	0.554