(34 nodes) Preribosome, large subunit precursor network (Colletotrichum fioriniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CFIO01_11763	Ribosome biogenesis protein nsa-2. (202 aa)
	CFIO01_08412	Brix domain-containing protein. (441 aa)
	CFIO01_06918	Eukaryotic rRNA processing protein EBP2. (443 aa)
	CFIO01_04052	Rsa3 domain-containing protein. (118 aa)
	CFIO01_12625	Uncharacterized protein. (1075 aa)
	CFIO01_01582	Noc2p family protein. (797 aa)
	CFIO01_03325	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (702 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (665 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (769 aa)
	CFIO01_00138	Uncharacterized protein. (742 aa)
	CFIO01_06882	Uncharacterized protein. (507 aa)
	CFIO01_06979	Ribosome biogenesis protein Nop16. (273 aa)
	CFIO01_06615	TRI15. (290 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (858 aa)
	CFIO01_05194	Uncharacterized protein. (285 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (483 aa)
	CFIO01_03326	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (189 aa)
	CFIO01_04044	Zinc finger protein. (132 aa)
	CFIO01_10588	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4984 aa)
	CFIO01_10699	Brix domain-containing protein. (303 aa)
	CFIO01_06680	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (612 aa)
	CFIO01_00331	Nucleolar protein,Nop52. (246 aa)
	CFIO01_06948	Uncharacterized protein. (929 aa)
	CFIO01_12703	Brix domain-containing protein. (428 aa)
	CFIO01_02479	Protein MAK16; Belongs to the MAK16 family. (319 aa)
	CFIO01_04961	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (197 aa)
	CFIO01_06767	Uncharacterized protein. (363 aa)
	CFIO01_07785	zf-C2H2_2 domain-containing protein. (372 aa)
	CFIO01_07307	CPL domain-containing protein. (703 aa)
	CFIO01_06769	Uncharacterized protein. (352 aa)
	CFIO01_06563	ATPase. (799 aa)
	CFIO01_10927	CP-type G domain-containing protein. (545 aa)
	CFIO01_10700	F-box domain-containing protein. (417 aa)
	CFIO01_12273	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (659 aa)

Your Current Organism:

Colletotrichum fioriniae

NCBI taxonomy Id: 1445577
Other names: C. fioriniae PJ7, Colletotrichum fioriniae PJ7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CFIO01_00138	CFIO01_04044	A0A010S0R0	A0A010RHC5	Uncharacterized protein.	Zinc finger protein.	0.568
CFIO01_00138	CFIO01_06680	A0A010S0R0	A0A010RF46	Uncharacterized protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.662
CFIO01_00138	CFIO01_10927	A0A010S0R0	A0A010QKC5	Uncharacterized protein.	CP-type G domain-containing protein.	0.655
CFIO01_00138	CFIO01_12273	A0A010S0R0	A0A010QER1	Uncharacterized protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.687
CFIO01_00138	ERB1	A0A010S0R0	A0A010S0T1	Uncharacterized protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.401
CFIO01_00138	NOP7	A0A010S0R0	A0A010S102	Uncharacterized protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.482
CFIO01_00138	YTM1	A0A010S0R0	A0A010RNF8	Uncharacterized protein.	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.639
CFIO01_00331	CFIO01_01582	A0A010RDM0	A0A010S2E5	Nucleolar protein,Nop52.	Noc2p family protein.	0.962
CFIO01_00331	CFIO01_02479	A0A010RDM0	A0A010R7N6	Nucleolar protein,Nop52.	Protein MAK16; Belongs to the MAK16 family.	0.992
CFIO01_00331	CFIO01_03325	A0A010RDM0	A0A010S267	Nucleolar protein,Nop52.	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.	0.955
CFIO01_00331	CFIO01_03326	A0A010RDM0	A0A010RL53	Nucleolar protein,Nop52.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.957
CFIO01_00331	CFIO01_04044	A0A010RDM0	A0A010RHC5	Nucleolar protein,Nop52.	Zinc finger protein.	0.561
CFIO01_00331	CFIO01_04961	A0A010RDM0	A0A010R5M3	Nucleolar protein,Nop52.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.904
CFIO01_00331	CFIO01_05194	A0A010RDM0	A0A010RPX0	Nucleolar protein,Nop52.	Uncharacterized protein.	0.957
CFIO01_00331	CFIO01_06680	A0A010RDM0	A0A010RF46	Nucleolar protein,Nop52.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.718
CFIO01_00331	CFIO01_06918	A0A010RDM0	A0A010Q9B0	Nucleolar protein,Nop52.	Eukaryotic rRNA processing protein EBP2.	0.987
CFIO01_00331	CFIO01_06948	A0A010RDM0	A0A010R973	Nucleolar protein,Nop52.	Uncharacterized protein.	0.912
CFIO01_00331	CFIO01_06979	A0A010RDM0	A0A010RXD9	Nucleolar protein,Nop52.	Ribosome biogenesis protein Nop16.	0.928
CFIO01_00331	CFIO01_07307	A0A010RDM0	A0A010QSG8	Nucleolar protein,Nop52.	CPL domain-containing protein.	0.724
CFIO01_00331	CFIO01_08412	A0A010RDM0	A0A010Q550	Nucleolar protein,Nop52.	Brix domain-containing protein.	0.955