STRINGSTRING
AH67_03405 AH67_03405 AH67_03510 AH67_03510 AH67_05595 AH67_05595 AH67_07540 AH67_07540 AH67_08490 AH67_08490
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AH67_03405Amino acid lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
AH67_03510Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
AH67_05595Serine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)
AH67_07540Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (190 aa)
AH67_08490Threonine dehydratase; Catalyzes the formation of 2-oxobutanoate from L-threonine; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
Your Current Organism:
Bifidobacterium pseudolongum
NCBI taxonomy Id: 1447715
Other names: B. pseudolongum PV8-2, Bifidobacterium pseudolongum PV8-2
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