(33 nodes) Regulation of mRNA processing, and Legionellosis network (Aspergillus uvarum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A319BVN2	Putative glutathione S-transferase. (279 aa)
	A0A319BVT8	Uncharacterized protein. (109 aa)
	A0A319BWP7	NAD(P)-binding protein. (308 aa)
	A0A319BXC6	F-box domain-containing protein. (700 aa)
	A0A319BXP6	Uncharacterized protein. (188 aa)
	A0A319C1J0	Kinase-like protein. (418 aa)
	A0A319C2H7	Uncharacterized protein. (112 aa)
	A0A319C2L4	Flavin_Reduct domain-containing protein. (261 aa)
	A0A319C2X0	Uncharacterized protein. (612 aa)
	A0A319C5D7	TPR domain-containing protein. (568 aa)
	A0A319C712	Kinase domain-containing protein. (400 aa)
	A0A319C828	Kinase domain protein. (428 aa)
	A0A319CA12	MMtag domain-containing protein. (124 aa)
	A0A319CAT4	Kinase-like protein. (311 aa)
	A0A319CD60	Kinase-like protein. (688 aa)
	A0A319CD77	Uncharacterized protein. (1721 aa)
	A0A319CDF1	CMGC protein kinase. (461 aa)
	A0A319CDJ3	TPR-like protein. (562 aa)
	A0A319CFL0	GST N-terminal domain-containing protein. (298 aa)
	A0A319CFU8	U4/U6 small nuclear ribonucleo protein PRP4. (444 aa)
	A0A319CH37	Kinase-like protein; Belongs to the protein kinase superfamily. (426 aa)
	A0A319CIC3	CMGC/CLK protein kinase. (438 aa)
	A0A319CIJ4	Uncharacterized protein. (423 aa)
	A0A319CJT0	Uncharacterized protein. (141 aa)
	A0A319D248	Kinase-like protein. (339 aa)
	A0A319D3F7	Kinase-like protein. (340 aa)
	A0A319D430	Uncharacterized protein. (108 aa)
	A0A319D579	Uncharacterized protein. (369 aa)
	A0A319D5T6	Flavin_Reduct domain-containing protein. (338 aa)
	A0A319DCI5	NmrA domain-containing protein. (255 aa)
	A0A319DI38	Kinase-like protein; Belongs to the protein kinase superfamily. (412 aa)
	A0A319DTE9	Kinase-like protein. (179 aa)
	A0A319E8B6	NAD(P)-binding protein. (302 aa)

Your Current Organism:

Aspergillus uvarum

NCBI taxonomy Id: 1448315
Other names: A. uvarum CBS 121591, Aspergillus uvarum CBS 121591

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A319CD60	A0A319CH37	Kinase-like protein.	Kinase-like protein; Belongs to the protein kinase superfamily.	0.499
A0A319CD60	A0A319CIC3	Kinase-like protein.	CMGC/CLK protein kinase.	0.499
A0A319CD60	A0A319CJT0	Kinase-like protein.	Uncharacterized protein.	0.499
A0A319CD60	A0A319D248	Kinase-like protein.	Kinase-like protein.	0.499
A0A319CD60	A0A319DI38	Kinase-like protein.	Kinase-like protein; Belongs to the protein kinase superfamily.	0.499
A0A319CD60	A0A319DTE9	Kinase-like protein.	Kinase-like protein.	0.499
A0A319CDF1	A0A319CFU8	CMGC protein kinase.	U4/U6 small nuclear ribonucleo protein PRP4.	0.401
A0A319CFU8	A0A319CDF1	U4/U6 small nuclear ribonucleo protein PRP4.	CMGC protein kinase.	0.401
A0A319CH37	A0A319CD60	Kinase-like protein; Belongs to the protein kinase superfamily.	Kinase-like protein.	0.499
A0A319CIC3	A0A319CD60	CMGC/CLK protein kinase.	Kinase-like protein.	0.499
A0A319CJT0	A0A319CD60	Uncharacterized protein.	Kinase-like protein.	0.499
A0A319D248	A0A319CD60	Kinase-like protein.	Kinase-like protein.	0.499
A0A319D3F7	A0A319DTE9	Kinase-like protein.	Kinase-like protein.	0.474
A0A319DI38	A0A319CD60	Kinase-like protein; Belongs to the protein kinase superfamily.	Kinase-like protein.	0.499
A0A319DTE9	A0A319CD60	Kinase-like protein.	Kinase-like protein.	0.499
A0A319DTE9	A0A319D3F7	Kinase-like protein.	Kinase-like protein.	0.474