(11 nodes) Activation of the AP-1 family of transcription factors, and Regulation of single-species biofilm formation network (Aspergillus uvarum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A319BQZ1	BZIP domain-containing protein. (279 aa)
	A0A319BSF3	MADS-box domain-containing protein. (121 aa)
	A0A319C0F4	WD40 repeat-like protein. (579 aa)
	A0A319C8Y2	BZIP domain-containing protein. (251 aa)
	A0A319CAE0	BZIP domain-containing protein. (365 aa)
	A0A319CEM8	Uncharacterized protein. (439 aa)
	A0A319CVV0	Uncharacterized protein. (284 aa)
	A0A319D0C0	Uncharacterized protein. (249 aa)
	A0A319D557	Putative transcriptional corepressor Cyc8. (868 aa)
	A0A319DBQ8	BZIP transcription factor. (495 aa)
	A0A319DLQ1	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (395 aa)

Your Current Organism:

Aspergillus uvarum

NCBI taxonomy Id: 1448315
Other names: A. uvarum CBS 121591, Aspergillus uvarum CBS 121591

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A319BQZ1	A0A319CEM8	BZIP domain-containing protein.	Uncharacterized protein.	0.645
A0A319BQZ1	A0A319CVV0	BZIP domain-containing protein.	Uncharacterized protein.	0.525
A0A319BQZ1	A0A319D0C0	BZIP domain-containing protein.	Uncharacterized protein.	0.842
A0A319BQZ1	A0A319D557	BZIP domain-containing protein.	Putative transcriptional corepressor Cyc8.	0.727
A0A319BQZ1	A0A319DBQ8	BZIP domain-containing protein.	BZIP transcription factor.	0.669
A0A319BQZ1	A0A319DLQ1	BZIP domain-containing protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.765
A0A319BSF3	A0A319CEM8	MADS-box domain-containing protein.	Uncharacterized protein.	0.647
A0A319BSF3	A0A319D557	MADS-box domain-containing protein.	Putative transcriptional corepressor Cyc8.	0.837
A0A319BSF3	A0A319DBQ8	MADS-box domain-containing protein.	BZIP transcription factor.	0.647
A0A319C0F4	A0A319CEM8	WD40 repeat-like protein.	Uncharacterized protein.	0.786
A0A319C0F4	A0A319D557	WD40 repeat-like protein.	Putative transcriptional corepressor Cyc8.	0.967
A0A319C0F4	A0A319DBQ8	WD40 repeat-like protein.	BZIP transcription factor.	0.925
A0A319C8Y2	A0A319CEM8	BZIP domain-containing protein.	Uncharacterized protein.	0.645
A0A319C8Y2	A0A319CVV0	BZIP domain-containing protein.	Uncharacterized protein.	0.525
A0A319C8Y2	A0A319D0C0	BZIP domain-containing protein.	Uncharacterized protein.	0.842
A0A319C8Y2	A0A319D557	BZIP domain-containing protein.	Putative transcriptional corepressor Cyc8.	0.727
A0A319C8Y2	A0A319DBQ8	BZIP domain-containing protein.	BZIP transcription factor.	0.645
A0A319C8Y2	A0A319DLQ1	BZIP domain-containing protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.765
A0A319CAE0	A0A319CEM8	BZIP domain-containing protein.	Uncharacterized protein.	0.645
A0A319CAE0	A0A319CVV0	BZIP domain-containing protein.	Uncharacterized protein.	0.525