(16 nodes) Cytoskeleton-dependent intracellular transport network (Aspergillus uvarum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A319DD32	Putative Noc1p protein. (677 aa)
	A0A319BVP4	Putative dynein intermediate chain. (683 aa)
	A0A319C1V4	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures. (94 aa)
	A0A319C222	Uncharacterized protein. (776 aa)
	A0A319C296	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (930 aa)
	A0A319C6F9	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (941 aa)
	A0A319CBA0	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (784 aa)
	A0A319CCD1	Dynactin. (1379 aa)
	A0A319CCI8	Uncharacterized protein. (421 aa)
	A0A319CCV4	Nuclear movement protein NudC. (196 aa)
	A0A319CE66	Uncharacterized protein. (246 aa)
	A0A319CFP2	Kinesin family protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1009 aa)
	A0A319CHC9	Uncharacterized protein. (517 aa)
	A0A319CHT0	Uncharacterized protein. (4348 aa)
	A0A319CXU6	Anucleate primary sterigmata protein A. (1628 aa)
	A0A319D2X3	Nuclear distribution protein nude. (598 aa)

Your Current Organism:

Aspergillus uvarum

NCBI taxonomy Id: 1448315
Other names: A. uvarum CBS 121591, Aspergillus uvarum CBS 121591

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A319BVP4	A0A319C1V4	Putative dynein intermediate chain.	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	0.994
A0A319BVP4	A0A319C296	Putative dynein intermediate chain.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.609
A0A319BVP4	A0A319C6F9	Putative dynein intermediate chain.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.807
A0A319BVP4	A0A319CCD1	Putative dynein intermediate chain.	Dynactin.	0.983
A0A319BVP4	A0A319CCV4	Putative dynein intermediate chain.	Nuclear movement protein NudC.	0.747
A0A319BVP4	A0A319CE66	Putative dynein intermediate chain.	Uncharacterized protein.	0.674
A0A319BVP4	A0A319CFP2	Putative dynein intermediate chain.	Kinesin family protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.789
A0A319BVP4	A0A319CHC9	Putative dynein intermediate chain.	Uncharacterized protein.	0.503
A0A319BVP4	A0A319CHT0	Putative dynein intermediate chain.	Uncharacterized protein.	0.996
A0A319BVP4	A0A319CXU6	Putative dynein intermediate chain.	Anucleate primary sterigmata protein A.	0.680
A0A319BVP4	A0A319D2X3	Putative dynein intermediate chain.	Nuclear distribution protein nude.	0.718
A0A319BVP4	A0A319DD32	Putative dynein intermediate chain.	Putative Noc1p protein.	0.745
A0A319C1V4	A0A319BVP4	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	Putative dynein intermediate chain.	0.994
A0A319C1V4	A0A319C6F9	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.724
A0A319C1V4	A0A319CCD1	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	Dynactin.	0.827
A0A319C1V4	A0A319CCV4	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	Nuclear movement protein NudC.	0.857
A0A319C1V4	A0A319CFP2	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	Kinesin family protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.712
A0A319C1V4	A0A319CHT0	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	Uncharacterized protein.	0.980
A0A319C1V4	A0A319D2X3	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	Nuclear distribution protein nude.	0.590
A0A319C222	A0A319CE66	Uncharacterized protein.	Uncharacterized protein.	0.534