11 items (Aspergillus uvarum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A319CFL9	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (237 aa)
	A0A319C561	Nitrite reductase NiiA. (1100 aa)
	A0A319C8I0	DUF455-domain-containing protein. (602 aa)
	A0A319CD28	Gamma-glutamylputrescine oxidoreductase. (588 aa)
	A0A319CD73	Uncharacterized protein. (156 aa)
	A0A319CDH8	Uncharacterized protein. (94 aa)
	A0A319CEX2	Iron-sulfur cluster-binding protein. (434 aa)
	A0A319CP07	AIF-like mitochondrial oxidoreductase. (559 aa)
	A0A319CP55	Rieske [2Fe-2S] domain protein. (172 aa)
	A0A319CQ91	ISP domain-containing protein. (410 aa)
	A0A319DCK0	Rieske domain-containing protein. (238 aa)

Your Current Organism:

Aspergillus uvarum

NCBI taxonomy Id: 1448315
Other names: A. uvarum CBS 121591, Aspergillus uvarum CBS 121591

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A319C561	A0A319CD73	Nitrite reductase NiiA.	Uncharacterized protein.	0.576
A0A319C561	A0A319CQ91	Nitrite reductase NiiA.	ISP domain-containing protein.	0.576
A0A319C561	A0A319DCK0	Nitrite reductase NiiA.	Rieske domain-containing protein.	0.576
A0A319CD73	A0A319C561	Uncharacterized protein.	Nitrite reductase NiiA.	0.576
A0A319CD73	A0A319CEX2	Uncharacterized protein.	Iron-sulfur cluster-binding protein.	0.417
A0A319CD73	A0A319CP07	Uncharacterized protein.	AIF-like mitochondrial oxidoreductase.	0.576
A0A319CD73	A0A319DCK0	Uncharacterized protein.	Rieske domain-containing protein.	0.471
A0A319CEX2	A0A319CD73	Iron-sulfur cluster-binding protein.	Uncharacterized protein.	0.417
A0A319CP07	A0A319CD73	AIF-like mitochondrial oxidoreductase.	Uncharacterized protein.	0.576
A0A319CP07	A0A319CQ91	AIF-like mitochondrial oxidoreductase.	ISP domain-containing protein.	0.576
A0A319CP07	A0A319DCK0	AIF-like mitochondrial oxidoreductase.	Rieske domain-containing protein.	0.576
A0A319CQ91	A0A319C561	ISP domain-containing protein.	Nitrite reductase NiiA.	0.576
A0A319CQ91	A0A319CP07	ISP domain-containing protein.	AIF-like mitochondrial oxidoreductase.	0.576
A0A319DCK0	A0A319C561	Rieske domain-containing protein.	Nitrite reductase NiiA.	0.576
A0A319DCK0	A0A319CD73	Rieske domain-containing protein.	Uncharacterized protein.	0.471
A0A319DCK0	A0A319CP07	Rieske domain-containing protein.	AIF-like mitochondrial oxidoreductase.	0.576