10 items (Aspergillus ibericus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A395GNY3	Topoisomerase II associated protein. (842 aa)
	A0A395GSX9	Sm domain-containing protein. (732 aa)
	A0A395GT03	Like-Sm ribonucleo protein. (80 aa)
	A0A395GUR2	Uncharacterized protein. (213 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (175 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (83 aa)
	A0A395H6K1	Uncharacterized protein. (349 aa)
	A0A395HCS6	U6 snRNA-associated Sm-like protein LSm7. (133 aa)
	A0A395HEI7	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)

Your Current Organism:

Aspergillus ibericus

NCBI taxonomy Id: 1448316
Other names: A. ibericus CBS 121593, Aspergillus ibericus CBS 121593

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A395GNY3	A0A395GSX9	A0A395GNY3	A0A395GSX9	Topoisomerase II associated protein.	Sm domain-containing protein.	0.999
A0A395GNY3	A0A395GT03	A0A395GNY3	A0A395GT03	Topoisomerase II associated protein.	Like-Sm ribonucleo protein.	0.999
A0A395GNY3	A0A395GUR2	A0A395GNY3	A0A395GUR2	Topoisomerase II associated protein.	Uncharacterized protein.	0.975
A0A395GNY3	A0A395H6K1	A0A395GNY3	A0A395H6K1	Topoisomerase II associated protein.	Uncharacterized protein.	0.972
A0A395GNY3	A0A395HCS6	A0A395GNY3	A0A395HCS6	Topoisomerase II associated protein.	U6 snRNA-associated Sm-like protein LSm7.	0.999
A0A395GNY3	A0A395HEI7	A0A395GNY3	A0A395HEI7	Topoisomerase II associated protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A0A395GNY3	LSM1	A0A395GNY3	A0A395GUU6	Topoisomerase II associated protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.975
A0A395GNY3	LSM3	A0A395GNY3	A0A395GVP7	Topoisomerase II associated protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A0A395GNY3	LSM5	A0A395GNY3	A0A395GYD5	Topoisomerase II associated protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
A0A395GSX9	A0A395GNY3	A0A395GSX9	A0A395GNY3	Sm domain-containing protein.	Topoisomerase II associated protein.	0.999
A0A395GSX9	A0A395GT03	A0A395GSX9	A0A395GT03	Sm domain-containing protein.	Like-Sm ribonucleo protein.	0.999
A0A395GSX9	A0A395GUR2	A0A395GSX9	A0A395GUR2	Sm domain-containing protein.	Uncharacterized protein.	0.980
A0A395GSX9	A0A395H6K1	A0A395GSX9	A0A395H6K1	Sm domain-containing protein.	Uncharacterized protein.	0.983
A0A395GSX9	A0A395HCS6	A0A395GSX9	A0A395HCS6	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm7.	0.999
A0A395GSX9	A0A395HEI7	A0A395GSX9	A0A395HEI7	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.983
A0A395GSX9	LSM1	A0A395GSX9	A0A395GUU6	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.980
A0A395GSX9	LSM3	A0A395GSX9	A0A395GVP7	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A0A395GSX9	LSM5	A0A395GSX9	A0A395GYD5	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
A0A395GT03	A0A395GNY3	A0A395GT03	A0A395GNY3	Like-Sm ribonucleo protein.	Topoisomerase II associated protein.	0.999
A0A395GT03	A0A395GSX9	A0A395GT03	A0A395GSX9	Like-Sm ribonucleo protein.	Sm domain-containing protein.	0.999