13 items (Aspergillus ibericus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A395GIA6	Stc1 domain-containing protein. (316 aa)
	A0A395GIR9	AAA_12 domain-containing protein. (497 aa)
	A0A395GJ15	C3H1-type domain-containing protein. (588 aa)
	A0A395GK68	DHS-like NAD/FAD-binding domain-containing protein. (563 aa)
	A0A395GM20	Uncharacterized protein. (654 aa)
	A0A395GNK3	RNA-dependent RNA polymerase. (1353 aa)
	A0A395GPQ6	P-loop containing nucleoside triphosphate hydrolase protein. (1889 aa)
	A0A395GTH4	ATP binding protein. (1078 aa)
	A0A395GVQ8	Cullin-4B; Belongs to the cullin family. (2543 aa)
	A0A395GYT1	C3H1-type domain-containing protein. (1928 aa)
	A0A395H4F0	Putative AAA family ATPase. (2298 aa)
	A0A395H8G4	RNA-dependent RNA polymerase. (1212 aa)
	A0A395HBJ6	AAA family ATPase. (2263 aa)

Your Current Organism:

Aspergillus ibericus

NCBI taxonomy Id: 1448316
Other names: A. ibericus CBS 121593, Aspergillus ibericus CBS 121593

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A395GIR9	A0A395GJ15	AAA_12 domain-containing protein.	C3H1-type domain-containing protein.	0.946
A0A395GIR9	A0A395GNK3	AAA_12 domain-containing protein.	RNA-dependent RNA polymerase.	0.429
A0A395GIR9	A0A395H8G4	AAA_12 domain-containing protein.	RNA-dependent RNA polymerase.	0.429
A0A395GJ15	A0A395GIR9	C3H1-type domain-containing protein.	AAA_12 domain-containing protein.	0.946
A0A395GJ15	A0A395GNK3	C3H1-type domain-containing protein.	RNA-dependent RNA polymerase.	0.429
A0A395GJ15	A0A395H8G4	C3H1-type domain-containing protein.	RNA-dependent RNA polymerase.	0.429
A0A395GNK3	A0A395GIR9	RNA-dependent RNA polymerase.	AAA_12 domain-containing protein.	0.429
A0A395GNK3	A0A395GJ15	RNA-dependent RNA polymerase.	C3H1-type domain-containing protein.	0.429
A0A395GNK3	A0A395GPQ6	RNA-dependent RNA polymerase.	P-loop containing nucleoside triphosphate hydrolase protein.	0.429
A0A395GNK3	A0A395GTH4	RNA-dependent RNA polymerase.	ATP binding protein.	0.429
A0A395GNK3	A0A395GYT1	RNA-dependent RNA polymerase.	C3H1-type domain-containing protein.	0.429
A0A395GNK3	A0A395H4F0	RNA-dependent RNA polymerase.	Putative AAA family ATPase.	0.429
A0A395GNK3	A0A395HBJ6	RNA-dependent RNA polymerase.	AAA family ATPase.	0.429
A0A395GPQ6	A0A395GNK3	P-loop containing nucleoside triphosphate hydrolase protein.	RNA-dependent RNA polymerase.	0.429
A0A395GPQ6	A0A395H8G4	P-loop containing nucleoside triphosphate hydrolase protein.	RNA-dependent RNA polymerase.	0.429
A0A395GTH4	A0A395GNK3	ATP binding protein.	RNA-dependent RNA polymerase.	0.429
A0A395GTH4	A0A395H8G4	ATP binding protein.	RNA-dependent RNA polymerase.	0.429
A0A395GYT1	A0A395GNK3	C3H1-type domain-containing protein.	RNA-dependent RNA polymerase.	0.429
A0A395GYT1	A0A395H8G4	C3H1-type domain-containing protein.	RNA-dependent RNA polymerase.	0.429
A0A395H4F0	A0A395GNK3	Putative AAA family ATPase.	RNA-dependent RNA polymerase.	0.429