17 items (Aspergillus ibericus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A395GHH9	Uncharacterized protein. (126 aa)
	A0A395GJZ3	Uncharacterized protein. (182 aa)
	A0A395GLK8	NAD dependent epimerase/dehydratase. (346 aa)
	A0A395GNV9	DNA polymerase. (1686 aa)
	A0A395GS47	Uncharacterized protein. (442 aa)
	A0A395GU87	DNA polymerase. (1911 aa)
	A0A395GVF7	POLAc domain-containing protein. (1137 aa)
	A0A395GWB6	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2230 aa)
	A0A395GXT7	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (654 aa)
	A0A395GYB4	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (500 aa)
	A0A395H362	Uncharacterized protein. (197 aa)
	A0A395H970	Uncharacterized protein. (444 aa)
	A0A395HA58	DNA-binding protein. (277 aa)
	A0A395HA74	DNA polymerase. (1098 aa)
	A0A395HBG9	DNA polymerase epsilon subunit B. (754 aa)
	A0A395HDH6	DNA polymerase delta subunit 2. (536 aa)
	A0A395HGU2	Glycosyl transferase family protein. (320 aa)

Your Current Organism:

Aspergillus ibericus

NCBI taxonomy Id: 1448316
Other names: A. ibericus CBS 121593, Aspergillus ibericus CBS 121593

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A395GHH9	A0A395GNV9	Uncharacterized protein.	DNA polymerase.	0.865
A0A395GHH9	A0A395GU87	Uncharacterized protein.	DNA polymerase.	0.917
A0A395GHH9	A0A395GWB6	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.976
A0A395GHH9	A0A395GXT7	Uncharacterized protein.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.776
A0A395GHH9	A0A395GYB4	Uncharacterized protein.	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family.	0.784
A0A395GHH9	A0A395H970	Uncharacterized protein.	Uncharacterized protein.	0.407
A0A395GHH9	A0A395HA74	Uncharacterized protein.	DNA polymerase.	0.896
A0A395GHH9	A0A395HBG9	Uncharacterized protein.	DNA polymerase epsilon subunit B.	0.974
A0A395GHH9	A0A395HDH6	Uncharacterized protein.	DNA polymerase delta subunit 2.	0.779
A0A395GJZ3	A0A395GNV9	Uncharacterized protein.	DNA polymerase.	0.865
A0A395GJZ3	A0A395GU87	Uncharacterized protein.	DNA polymerase.	0.917
A0A395GJZ3	A0A395GWB6	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.976
A0A395GJZ3	A0A395GXT7	Uncharacterized protein.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.776
A0A395GJZ3	A0A395GYB4	Uncharacterized protein.	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family.	0.784
A0A395GJZ3	A0A395H970	Uncharacterized protein.	Uncharacterized protein.	0.407
A0A395GJZ3	A0A395HA74	Uncharacterized protein.	DNA polymerase.	0.896
A0A395GJZ3	A0A395HBG9	Uncharacterized protein.	DNA polymerase epsilon subunit B.	0.974
A0A395GJZ3	A0A395HDH6	Uncharacterized protein.	DNA polymerase delta subunit 2.	0.779
A0A395GNV9	A0A395GHH9	DNA polymerase.	Uncharacterized protein.	0.865
A0A395GNV9	A0A395GJZ3	DNA polymerase.	Uncharacterized protein.	0.865