6 items (Aspergillus ibericus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A395GQF8	F-box and WD domain protein. (891 aa)
	A0A395GRM0	Proteasome activator subunit 4. (1963 aa)
	A0A395H1H6	F-box and WD40 domain protein. (659 aa)
	A0A395H375	Ubiquitin-40S ribosomal protein S31 fusion protein. (154 aa)
	A0A395H9J8	VWFA domain-containing protein. (276 aa)
	A0A395HDY3	BZIP domain-containing protein. (252 aa)

Your Current Organism:

Aspergillus ibericus

NCBI taxonomy Id: 1448316
Other names: A. ibericus CBS 121593, Aspergillus ibericus CBS 121593

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A395GQF8	A0A395H375	F-box and WD domain protein.	Ubiquitin-40S ribosomal protein S31 fusion protein.	0.736
A0A395GQF8	A0A395H9J8	F-box and WD domain protein.	VWFA domain-containing protein.	0.477
A0A395GQF8	A0A395HDY3	F-box and WD domain protein.	BZIP domain-containing protein.	0.736
A0A395GRM0	A0A395H375	Proteasome activator subunit 4.	Ubiquitin-40S ribosomal protein S31 fusion protein.	0.631
A0A395GRM0	A0A395H9J8	Proteasome activator subunit 4.	VWFA domain-containing protein.	0.981
A0A395GRM0	A0A395HDY3	Proteasome activator subunit 4.	BZIP domain-containing protein.	0.631
A0A395H1H6	A0A395H375	F-box and WD40 domain protein.	Ubiquitin-40S ribosomal protein S31 fusion protein.	0.736
A0A395H1H6	A0A395H9J8	F-box and WD40 domain protein.	VWFA domain-containing protein.	0.477
A0A395H1H6	A0A395HDY3	F-box and WD40 domain protein.	BZIP domain-containing protein.	0.736
A0A395H375	A0A395GQF8	Ubiquitin-40S ribosomal protein S31 fusion protein.	F-box and WD domain protein.	0.736
A0A395H375	A0A395GRM0	Ubiquitin-40S ribosomal protein S31 fusion protein.	Proteasome activator subunit 4.	0.631
A0A395H375	A0A395H1H6	Ubiquitin-40S ribosomal protein S31 fusion protein.	F-box and WD40 domain protein.	0.736
A0A395H375	A0A395H9J8	Ubiquitin-40S ribosomal protein S31 fusion protein.	VWFA domain-containing protein.	0.968
A0A395H9J8	A0A395GQF8	VWFA domain-containing protein.	F-box and WD domain protein.	0.477
A0A395H9J8	A0A395GRM0	VWFA domain-containing protein.	Proteasome activator subunit 4.	0.981
A0A395H9J8	A0A395H1H6	VWFA domain-containing protein.	F-box and WD40 domain protein.	0.477
A0A395H9J8	A0A395H375	VWFA domain-containing protein.	Ubiquitin-40S ribosomal protein S31 fusion protein.	0.968
A0A395H9J8	A0A395HDY3	VWFA domain-containing protein.	BZIP domain-containing protein.	0.968
A0A395HDY3	A0A395GQF8	BZIP domain-containing protein.	F-box and WD domain protein.	0.736
A0A395HDY3	A0A395GRM0	BZIP domain-containing protein.	Proteasome activator subunit 4.	0.631