28 items (Aspergillus ibericus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A395GZC2	Transcription factor TFIIH complex subunit. (383 aa)
	A0A395GZK3	Metallothionein-I gene transcription activator. (77 aa)
	A0A395GZU7	Cyclin Ccl1; Belongs to the cyclin family. (419 aa)
	A0A395H2B8	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (452 aa)
	A0A395H4V8	DNA repair helicase rad25. (817 aa)
	A0A395H594	RPOL9 domain-containing protein. (122 aa)
	A0A395H6R4	Uncharacterized protein. (316 aa)
	A0A395H7P6	Uncharacterized protein. (506 aa)
	A0A395GPN6	DNA repair helicase. (794 aa)
	A0A395H964	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (712 aa)
	A0A395H9J3	Transcription initiation factor iif, beta subunit. (384 aa)
	A0A395H9L0	DNA-directed RNA polymerase subunit E. (169 aa)
	A0A395HA07	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1256 aa)
	A0A395GQJ4	RNA polymerase II transcription factor. (626 aa)
	A0A395HA92	RNA polymerase II transcription factor B subunit 5. (72 aa)
	A0A395GLQ8	Insert subdomain of RNA polymerase alpha subunit. (337 aa)
	A0A395HAZ3	SCA7 domain-containing protein. (920 aa)
	A0A395HBQ8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1746 aa)
	A0A395HDM8	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1054 aa)
	A0A395HDT0	DNA-directed RNA polymerases N/8 kDa subunit superfamily. (74 aa)
	A0A395GRZ5	mRNA cap guanine-N7 methyltransferase. (635 aa)
	A0A395HED5	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (235 aa)
	A0A395HEX3	DNA-directed RNA polymerase II subunit RPB11a. (165 aa)
	A0A395HF77	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (144 aa)
	A0A395HGA5	CDK-activating kinase assembly factor MAT1. (384 aa)
	A0A395GYE3	Dual specificity phosphatase catalytic domain protein. (669 aa)
	A0A395GR28	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (432 aa)
	A0A395GYV5	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (160 aa)

Your Current Organism:

Aspergillus ibericus

NCBI taxonomy Id: 1448316
Other names: A. ibericus CBS 121593, Aspergillus ibericus CBS 121593

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A395GLQ8	A0A395GPN6	Insert subdomain of RNA polymerase alpha subunit.	DNA repair helicase.	0.983
A0A395GLQ8	A0A395GQJ4	Insert subdomain of RNA polymerase alpha subunit.	RNA polymerase II transcription factor.	0.980
A0A395GLQ8	A0A395GR28	Insert subdomain of RNA polymerase alpha subunit.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.980
A0A395GLQ8	A0A395GRZ5	Insert subdomain of RNA polymerase alpha subunit.	mRNA cap guanine-N7 methyltransferase.	0.848
A0A395GLQ8	A0A395GYE3	Insert subdomain of RNA polymerase alpha subunit.	Dual specificity phosphatase catalytic domain protein.	0.838
A0A395GLQ8	A0A395GYV5	Insert subdomain of RNA polymerase alpha subunit.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.999
A0A395GLQ8	A0A395GZC2	Insert subdomain of RNA polymerase alpha subunit.	Transcription factor TFIIH complex subunit.	0.981
A0A395GLQ8	A0A395GZK3	Insert subdomain of RNA polymerase alpha subunit.	Metallothionein-I gene transcription activator.	0.999
A0A395GLQ8	A0A395GZU7	Insert subdomain of RNA polymerase alpha subunit.	Cyclin Ccl1; Belongs to the cyclin family.	0.962
A0A395GLQ8	A0A395H2B8	Insert subdomain of RNA polymerase alpha subunit.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.982
A0A395GLQ8	A0A395H4V8	Insert subdomain of RNA polymerase alpha subunit.	DNA repair helicase rad25.	0.980
A0A395GLQ8	A0A395H594	Insert subdomain of RNA polymerase alpha subunit.	RPOL9 domain-containing protein.	0.999
A0A395GLQ8	A0A395H6R4	Insert subdomain of RNA polymerase alpha subunit.	Uncharacterized protein.	0.950
A0A395GLQ8	A0A395H7P6	Insert subdomain of RNA polymerase alpha subunit.	Uncharacterized protein.	0.977
A0A395GLQ8	A0A395H964	Insert subdomain of RNA polymerase alpha subunit.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.994
A0A395GLQ8	A0A395H9J3	Insert subdomain of RNA polymerase alpha subunit.	Transcription initiation factor iif, beta subunit.	0.995
A0A395GLQ8	A0A395H9L0	Insert subdomain of RNA polymerase alpha subunit.	DNA-directed RNA polymerase subunit E.	0.999
A0A395GLQ8	A0A395HA07	Insert subdomain of RNA polymerase alpha subunit.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A395GLQ8	A0A395HA92	Insert subdomain of RNA polymerase alpha subunit.	RNA polymerase II transcription factor B subunit 5.	0.906
A0A395GLQ8	A0A395HAZ3	Insert subdomain of RNA polymerase alpha subunit.	SCA7 domain-containing protein.	0.840