103 items (Aspergillus ibericus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A395GJ84	C6 finger domain protein. (382 aa)
	A0A395GHX9	RRM domain-containing protein. (248 aa)
	A0A395GIS6	FHA domain-containing protein. (1652 aa)
	A0A395GIT4	WD40 repeat-like protein. (1547 aa)
	A0A395GIX5	SAP domain-containing protein. (658 aa)
	A0A395GJS5	DEAD-domain-containing protein; Belongs to the DEAD box helicase family. (491 aa)
	A0A395GL29	R3H domain protein. (605 aa)
	A0A395GLF8	Putative polyadenylation factor subunit CstF64. (296 aa)
	A0A395GLH3	DUF676 domain-containing protein. (1109 aa)
	A0A395GLI6	FAD binding domain-containing protein. (524 aa)
	A0A395GLU1	Cap binding protein. (855 aa)
	A0A395GMP6	RING-type domain-containing protein. (963 aa)
	A0A395GNF6	Mago nashi protein. (154 aa)
	A0A395GNK3	RNA-dependent RNA polymerase. (1353 aa)
	A0A395GNL9	P-loop containing nucleoside triphosphate hydrolase protein. (440 aa)
	A0A395GP03	DUF676 domain-containing protein. (306 aa)
	A0A395GPD4	Tr-type G domain-containing protein. (579 aa)
	A0A395GPU2	Tr-type G domain-containing protein. (726 aa)
	A0A395GPZ2	GLE1-domain-containing protein. (483 aa)
	A0A395GQ74	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (276 aa)
	A0A395GQP6	Ssu72-like protein. (287 aa)
	A0A395GQR0	Smr domain protein. (560 aa)
	A0A395GR16	Serine/threonine-protein phosphatase. (513 aa)
	A0A395GR68	RNA-binding domain-containing protein. (304 aa)
	A0A395GRZ5	mRNA cap guanine-N7 methyltransferase. (635 aa)
	A0A395GSG2	Uncharacterized protein. (210 aa)
	A0A395GSS9	Fumarate reductase; Irreversibly catalyzes the reduction of fumarate to succinate. (485 aa)
	A0A395GSV1	Uncharacterized protein. (217 aa)
	A0A395GVI2	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins which plays important roles in the quality control and ER-associated degradation of GPI-anchored proteins. (1078 aa)
	A0A395GW86	RRM domain-containing protein. (313 aa)
	A0A395GWE9	RRM domain-containing protein. (1019 aa)
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (558 aa)
	A0A395GWP7	WD-40 repeat protein. (370 aa)
	A0A395GWP9	Cleavage and polyadenylation specificity factor subunit 2. (1001 aa)
	A0A395GXV2	Uncharacterized protein. (607 aa)
	A0A395GY42	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (324 aa)
	A0A395GY58	mRNA export factor mex67. (668 aa)
	A0A395GYE3	Dual specificity phosphatase catalytic domain protein. (669 aa)
	A0A395GYE9	Putative RNA binding protein. (159 aa)
	A0A395GYF7	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (726 aa)
	A0A395GYG5	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (403 aa)
	A0A395GYQ1	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins which plays important roles in the quality control and ER-associated degradation of GPI-anchored proteins. (323 aa)
	A0A395GZD1	ARM repeat-containing protein. (616 aa)
	A0A395H034	RNA-binding domain-containing protein. (188 aa)
	A0A395H0J1	RNA binding protein Pym. (220 aa)
	A0A395H0X1	Serine/threonine-protein phosphatase. (329 aa)
	A0A395H138	mRNA cleavage and polyadenylation specificity factor complex subunit. (762 aa)
	A0A395H1C9	Catalytic protein. (1481 aa)
	A0A395H1H4	Uncharacterized protein. (453 aa)
	A0A395H1U9	CFIA complex component Rna14. (1007 aa)
	A0A395H284	Protein cft1. (1389 aa)
	A0A395H2C7	NADH-ubiquinone oxidoreductase. (111 aa)
	A0A395H2G4	RNA-binding domain-containing protein. (328 aa)
	A0A395H2L9	CCCH zinc finger and SMR domain protein. (740 aa)
	A0A395H3I2	Uncharacterized protein. (224 aa)
	A0A395H3N8	Uncharacterized protein. (181 aa)
	A0A395H3U7	WD repeat protein. (606 aa)
	A0A395H4C8	Nuclear cap-binding protein subunit 2. (176 aa)
	A0A395H4M4	DUF2439 domain-containing protein. (428 aa)
	A0A395H5A8	RNA-binding domain-containing protein. (528 aa)
	A0A395H5C8	GAR domain-containing protein. (1351 aa)
	A0A395H5C9	S-adenosyl-L-methionine-dependent methyltransferase. (618 aa)
	A0A395H5J5	Lipa and NB-ARC domain protein. (733 aa)
	A0A395H5R5	PWI domain-containing protein. (607 aa)
	A0A395H5Y7	Glyco_hydro_79C domain-containing protein. (538 aa)
	A0A395H621	Putative eukaryotic translation initiation factor eIF-4A subunit; Belongs to the DEAD box helicase family. (399 aa)
	A0A395H638	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (636 aa)
	A0A395H6J7	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (476 aa)
	A0A395H6N4	Uncharacterized protein. (403 aa)
	A0A395H7R7	Fumarate reductase Osm1. (631 aa)
	A0A395H834	Uncharacterized protein. (254 aa)
	A0A395H8G4	RNA-dependent RNA polymerase. (1212 aa)
	A0A395H8N2	Pinin/SDK/memA domain protein. (313 aa)
	A0A395H8N7	Sulfite efflux pump SSU1. (396 aa)
	A0A395H8U7	RNA-binding domain-containing protein. (303 aa)
	A0A395HAZ3	SCA7 domain-containing protein. (920 aa)
	A0A395HB33	RNA-binding domain-containing protein. (452 aa)
	A0A395HBG4	mRNA cleavage factor complex component Pcf11. (653 aa)
	A0A395HBL3	Retinoblastoma-binding protein. (622 aa)
	A0A395HBM0	Uncharacterized protein. (1258 aa)
	A0A395HBY4	DNA repair protein Pso2/Snm1. (846 aa)
	A0A395HC12	Uncharacterized protein. (108 aa)
	A0A395HCB3	AB hydrolase-1 domain-containing protein. (304 aa)
	A0A395HCI8	Uncharacterized protein. (294 aa)
	A0A395HCK2	RRM domain-containing protein. (579 aa)
	A0A395HCM9	Uncharacterized protein. (673 aa)
	A0A395HCU2	COP9 signalosome, subunit CSN5. (333 aa)
	A0A395HCV8	Eukaryotic peptide chain release factor subunit 1. (434 aa)
	A0A395HD46	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins which plays important roles in the quality control and ER-associated degradation of GPI-anchored proteins. (1838 aa)
	A0A395HD96	Actin monomer binding protein. (341 aa)
	A0A395HDD9	ATP-dependent RNA helicase dbp6. (845 aa)
	BO80DRAFT_574	RRM domain-containing protein. (285 aa)
	A0A395HDV1	Zn(2)-C6 fungal-type domain-containing protein. (671 aa)
	A0A395HDY8	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (598 aa)
	A0A395HED1	Uncharacterized protein. (542 aa)
	A0A395HEG7	Uncharacterized protein. (903 aa)
	A0A395HEQ1	Uncharacterized protein. (373 aa)
	A0A395HER1	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (682 aa)
	A0A395HEV1	Uncharacterized protein. (203 aa)
	A0A395HEZ5	Uncharacterized protein. (866 aa)
	A0A395HFL5	Uncharacterized protein. (620 aa)
	A0A395HFX7	NTF2-like protein. (162 aa)
	A0A395HGK3	NACHT and TPR domain protein. (1390 aa)

Your Current Organism:

Aspergillus ibericus

NCBI taxonomy Id: 1448316
Other names: A. ibericus CBS 121593, Aspergillus ibericus CBS 121593

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A395GHX9	A0A395GIX5	A0A395GHX9	A0A395GIX5	RRM domain-containing protein.	SAP domain-containing protein.	0.833
A0A395GHX9	A0A395GJS5	A0A395GHX9	A0A395GJS5	RRM domain-containing protein.	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	0.568
A0A395GHX9	A0A395GL29	A0A395GHX9	A0A395GL29	RRM domain-containing protein.	R3H domain protein.	0.764
A0A395GHX9	A0A395GLF8	A0A395GHX9	A0A395GLF8	RRM domain-containing protein.	Putative polyadenylation factor subunit CstF64.	0.831
A0A395GHX9	A0A395GLU1	A0A395GHX9	A0A395GLU1	RRM domain-containing protein.	Cap binding protein.	0.942
A0A395GHX9	A0A395GNF6	A0A395GHX9	A0A395GNF6	RRM domain-containing protein.	Mago nashi protein.	0.959
A0A395GHX9	A0A395GNL9	A0A395GHX9	A0A395GNL9	RRM domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.996
A0A395GHX9	A0A395GPZ2	A0A395GHX9	A0A395GPZ2	RRM domain-containing protein.	GLE1-domain-containing protein.	0.716
A0A395GHX9	A0A395GQ74	A0A395GHX9	A0A395GQ74	RRM domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.839
A0A395GHX9	A0A395GR68	A0A395GHX9	A0A395GR68	RRM domain-containing protein.	RNA-binding domain-containing protein.	0.836
A0A395GHX9	A0A395GW86	A0A395GHX9	A0A395GW86	RRM domain-containing protein.	RRM domain-containing protein.	0.481
A0A395GHX9	A0A395GWP9	A0A395GHX9	A0A395GWP9	RRM domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.827
A0A395GHX9	A0A395GXV2	A0A395GHX9	A0A395GXV2	RRM domain-containing protein.	Uncharacterized protein.	0.763
A0A395GHX9	A0A395GY58	A0A395GHX9	A0A395GY58	RRM domain-containing protein.	mRNA export factor mex67.	0.991
A0A395GHX9	A0A395GYE9	A0A395GHX9	A0A395GYE9	RRM domain-containing protein.	Putative RNA binding protein.	0.945
A0A395GHX9	A0A395GYF7	A0A395GHX9	A0A395GYF7	RRM domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.558
A0A395GHX9	A0A395H034	A0A395GHX9	A0A395H034	RRM domain-containing protein.	RNA-binding domain-containing protein.	0.777
A0A395GHX9	A0A395H138	A0A395GHX9	A0A395H138	RRM domain-containing protein.	mRNA cleavage and polyadenylation specificity factor complex subunit.	0.687
A0A395GHX9	A0A395H1H4	A0A395GHX9	A0A395H1H4	RRM domain-containing protein.	Uncharacterized protein.	0.670
A0A395GHX9	A0A395H1U9	A0A395GHX9	A0A395H1U9	RRM domain-containing protein.	CFIA complex component Rna14.	0.693