(14 nodes) Mixed, incl. UBX domain, and VCP-NPL4-UFD1 AAA ATPase complex network (Aspergillus heteromorphus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317URR9	UBX domain protein. (515 aa)
	A0A317UVI2	OTU-like cysteine protease. (328 aa)
	A0A317V3Y3	AAA-domain-containing protein. (751 aa)
	A0A317V5H8	UBX domain-containing protein. (521 aa)
	A0A317V787	Cell division cycle protein 48; Belongs to the AAA ATPase family. (820 aa)
	A0A317VQI6	PFU-domain-containing protein. (789 aa)
	A0A317VWS2	Membrane-tethered transcription factor. (1427 aa)
	A0A317W5H4	Uncharacterized protein. (991 aa)
	A0A317W6K7	UBX domain-containing protein. (450 aa)
	A0A317W925	Putative AAA family ATPase/60S ribosome export protein Rix7. (733 aa)
	A0A317WIB7	Uncharacterized protein. (306 aa)
	A0A317WIN0	UBX domain-containing protein. (508 aa)
	A0A317WKQ2	UFD1-domain-containing protein. (364 aa)
	A0A317WLF7	Nuclear protein localization protein 4. (606 aa)

Your Current Organism:

Aspergillus heteromorphus

NCBI taxonomy Id: 1448321
Other names: A. heteromorphus CBS 117.55, Aspergillus heteromorphus CBS 117.55

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317URR9	A0A317UVI2	UBX domain protein.	OTU-like cysteine protease.	0.524
A0A317URR9	A0A317V3Y3	UBX domain protein.	AAA-domain-containing protein.	0.906
A0A317URR9	A0A317V5H8	UBX domain protein.	UBX domain-containing protein.	0.911
A0A317URR9	A0A317V787	UBX domain protein.	Cell division cycle protein 48; Belongs to the AAA ATPase family.	0.938
A0A317URR9	A0A317VQI6	UBX domain protein.	PFU-domain-containing protein.	0.941
A0A317URR9	A0A317W5H4	UBX domain protein.	Uncharacterized protein.	0.879
A0A317URR9	A0A317W6K7	UBX domain protein.	UBX domain-containing protein.	0.930
A0A317URR9	A0A317W925	UBX domain protein.	Putative AAA family ATPase/60S ribosome export protein Rix7.	0.747
A0A317URR9	A0A317WIB7	UBX domain protein.	Uncharacterized protein.	0.930
A0A317URR9	A0A317WIN0	UBX domain protein.	UBX domain-containing protein.	0.952
A0A317URR9	A0A317WKQ2	UBX domain protein.	UFD1-domain-containing protein.	0.925
A0A317URR9	A0A317WLF7	UBX domain protein.	Nuclear protein localization protein 4.	0.944
A0A317UVI2	A0A317URR9	OTU-like cysteine protease.	UBX domain protein.	0.524
A0A317UVI2	A0A317V3Y3	OTU-like cysteine protease.	AAA-domain-containing protein.	0.967
A0A317UVI2	A0A317V787	OTU-like cysteine protease.	Cell division cycle protein 48; Belongs to the AAA ATPase family.	0.984
A0A317UVI2	A0A317VQI6	OTU-like cysteine protease.	PFU-domain-containing protein.	0.960
A0A317UVI2	A0A317VWS2	OTU-like cysteine protease.	Membrane-tethered transcription factor.	0.886
A0A317UVI2	A0A317W5H4	OTU-like cysteine protease.	Uncharacterized protein.	0.881
A0A317UVI2	A0A317W925	OTU-like cysteine protease.	Putative AAA family ATPase/60S ribosome export protein Rix7.	0.702
A0A317UVI2	A0A317WIN0	OTU-like cysteine protease.	UBX domain-containing protein.	0.614