(5 nodes) Derlin, and Glucosidase II beta subunit-like protein network (Aspergillus heteromorphus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317USL0	DER1-domain-containing protein. (619 aa)
	A0A317WB38	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (246 aa)
	A0A317WSG8	Protein OS-9. (524 aa)
	A0A317WVJ5	RING-type domain-containing protein. (766 aa)
	A0A317X046	Putative ubiquitin-protein ligase Sel1/Ubx2. (838 aa)

Your Current Organism:

Aspergillus heteromorphus

NCBI taxonomy Id: 1448321
Other names: A. heteromorphus CBS 117.55, Aspergillus heteromorphus CBS 117.55

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317USL0	A0A317WB38	DER1-domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.958
A0A317USL0	A0A317WSG8	DER1-domain-containing protein.	Protein OS-9.	0.986
A0A317USL0	A0A317WVJ5	DER1-domain-containing protein.	RING-type domain-containing protein.	0.994
A0A317USL0	A0A317X046	DER1-domain-containing protein.	Putative ubiquitin-protein ligase Sel1/Ubx2.	0.990
A0A317WB38	A0A317USL0	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	DER1-domain-containing protein.	0.958
A0A317WB38	A0A317WSG8	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Protein OS-9.	0.991
A0A317WB38	A0A317WVJ5	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	RING-type domain-containing protein.	0.994
A0A317WB38	A0A317X046	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Putative ubiquitin-protein ligase Sel1/Ubx2.	0.996
A0A317WSG8	A0A317USL0	Protein OS-9.	DER1-domain-containing protein.	0.986
A0A317WSG8	A0A317WB38	Protein OS-9.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.991
A0A317WSG8	A0A317WVJ5	Protein OS-9.	RING-type domain-containing protein.	0.993
A0A317WSG8	A0A317X046	Protein OS-9.	Putative ubiquitin-protein ligase Sel1/Ubx2.	0.995
A0A317WVJ5	A0A317USL0	RING-type domain-containing protein.	DER1-domain-containing protein.	0.994
A0A317WVJ5	A0A317WB38	RING-type domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.994
A0A317WVJ5	A0A317WSG8	RING-type domain-containing protein.	Protein OS-9.	0.993
A0A317WVJ5	A0A317X046	RING-type domain-containing protein.	Putative ubiquitin-protein ligase Sel1/Ubx2.	0.994
A0A317X046	A0A317USL0	Putative ubiquitin-protein ligase Sel1/Ubx2.	DER1-domain-containing protein.	0.990
A0A317X046	A0A317WB38	Putative ubiquitin-protein ligase Sel1/Ubx2.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.996
A0A317X046	A0A317WSG8	Putative ubiquitin-protein ligase Sel1/Ubx2.	Protein OS-9.	0.995
A0A317X046	A0A317WVJ5	Putative ubiquitin-protein ligase Sel1/Ubx2.	RING-type domain-containing protein.	0.994