(43 nodes) Vesicle organization network (Aspergillus heteromorphus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317W931	Uncharacterized protein. (683 aa)
	A0A317WTL6	Uncharacterized protein. (2192 aa)
	A0A317WS52	Golgi complex component. (1579 aa)
	A0A317WS35	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (752 aa)
	A0A317WRX6	V-snare-domain-containing protein. (309 aa)
	A0A317WRH2	SNF7 family protein. (466 aa)
	A0A317WM24	Ras-domain-containing protein. (218 aa)
	A0A317WLW7	Putative nuclear pore complex subunit; Belongs to the WD repeat SEC13 family. (309 aa)
	A0A317WKE4	Autophagy related lipase Atg15. (613 aa)
	A0A317WI85	t-SNARE; Belongs to the syntaxin family. (272 aa)
	A0A317WEJ2	Synaptobrevin-domain-containing protein. (95 aa)
	A0A317WDC3	Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family. (523 aa)
	A0A317WCC0	Small COPII coat GTPase sar1; Belongs to the small GTPase superfamily. SAR1 family. (189 aa)
	A0A317WAD0	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (227 aa)
	A0A317W9Z3	Snf7-domain-containing protein. (207 aa)
	A0A317W9J6	M protein repeat protein. (850 aa)
	A0A317WTR6	Uncharacterized protein. (215 aa)
	A0A317W1L0	Ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (246 aa)
	A0A317VZD1	SNARE domain protein. (541 aa)
	A0A317VWF5	GPP34-domain-containing protein. (353 aa)
	A0A317VVQ7	SNARE domain protein. (313 aa)
	A0A317VPJ4	Snf7-domain-containing protein. (222 aa)
	A0A317VLK3	Uncharacterized protein. (1936 aa)
	A0A317VJV7	GTPase-activating protein arf. (482 aa)
	A0A317VGN8	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family. (1883 aa)
	A0A317VFJ9	t-SNARE coiled-coil homology domain-containing protein. (425 aa)
	A0A317VEJ8	SNARE complex subunit SEC22; Belongs to the synaptobrevin family. (215 aa)
	A0A317V7X9	Pep3_Vps18 domain-containing protein. (877 aa)
	A0A317V6I2	E3 ubiquitin-protein ligase PEP5. (951 aa)
	A0A317V1K6	Uncharacterized protein. (605 aa)
	A0A317UZF6	Uncharacterized protein. (172 aa)
	A0A317UUN6	CNH domain-containing protein. (1198 aa)
	A0A317X586	FYVE-domain-containing protein. (675 aa)
	A0A317X2N0	t-SNARE. (339 aa)
	A0A317X1X2	Sec23/Sec24 family protein. (995 aa)
	A0A317X1E9	Vacuolar assembly protein. (1320 aa)
	A0A317WZV5	Suppressor/enhancer of lin-12 protein 9. (203 aa)
	A0A317WYM6	t-SNARE coiled-coil homology domain-containing protein. (818 aa)
	A0A317WY35	KxDL domain-containing protein. (179 aa)
	A0A317WXU9	SNARE complex subunit. (266 aa)
	A0A317WX94	CNH domain-containing protein. (1061 aa)
	A0A317WVH4	Ubiquitin-conjugating enzyme. (358 aa)
	A0A317WU29	t-SNARE; Belongs to the syntaxin family. (396 aa)

Your Current Organism:

Aspergillus heteromorphus

NCBI taxonomy Id: 1448321
Other names: A. heteromorphus CBS 117.55, Aspergillus heteromorphus CBS 117.55

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317UUN6	A0A317V1K6	CNH domain-containing protein.	Uncharacterized protein.	0.527
A0A317UUN6	A0A317V6I2	CNH domain-containing protein.	E3 ubiquitin-protein ligase PEP5.	0.994
A0A317UUN6	A0A317V7X9	CNH domain-containing protein.	Pep3_Vps18 domain-containing protein.	0.993
A0A317UUN6	A0A317VZD1	CNH domain-containing protein.	SNARE domain protein.	0.582
A0A317UUN6	A0A317WDC3	CNH domain-containing protein.	Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.	0.645
A0A317UUN6	A0A317WEJ2	CNH domain-containing protein.	Synaptobrevin-domain-containing protein.	0.689
A0A317UUN6	A0A317WI85	CNH domain-containing protein.	t-SNARE; Belongs to the syntaxin family.	0.903
A0A317UUN6	A0A317WLW7	CNH domain-containing protein.	Putative nuclear pore complex subunit; Belongs to the WD repeat SEC13 family.	0.418
A0A317UUN6	A0A317WM24	CNH domain-containing protein.	Ras-domain-containing protein.	0.728
A0A317UUN6	A0A317WRX6	CNH domain-containing protein.	V-snare-domain-containing protein.	0.827
A0A317UUN6	A0A317WS52	CNH domain-containing protein.	Golgi complex component.	0.944
A0A317UUN6	A0A317WX94	CNH domain-containing protein.	CNH domain-containing protein.	0.957
A0A317UUN6	A0A317WXU9	CNH domain-containing protein.	SNARE complex subunit.	0.582
A0A317UUN6	A0A317X1E9	CNH domain-containing protein.	Vacuolar assembly protein.	0.992
A0A317UUN6	A0A317X586	CNH domain-containing protein.	FYVE-domain-containing protein.	0.508
A0A317UZF6	A0A317VEJ8	Uncharacterized protein.	SNARE complex subunit SEC22; Belongs to the synaptobrevin family.	0.997
A0A317UZF6	A0A317VFJ9	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.461
A0A317UZF6	A0A317VJV7	Uncharacterized protein.	GTPase-activating protein arf.	0.862
A0A317UZF6	A0A317VVQ7	Uncharacterized protein.	SNARE domain protein.	0.790
A0A317UZF6	A0A317VZD1	Uncharacterized protein.	SNARE domain protein.	0.674