(9 nodes) Dynein complex network (Aspergillus heteromorphus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317W8B3	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures. (94 aa)
	A0A317WYB1	Dynein light intermediate chain. (523 aa)
	A0A317WTD3	Cytoplasmic dynein intermediate chain. (681 aa)
	A0A317WS18	Actin-1; Belongs to the actin family. (381 aa)
	A0A317WGW1	Uncharacterized protein. (4344 aa)
	A0A317WE70	Uncharacterized protein. (241 aa)
	A0A317WAD3	Rhodopsin family protein. (138 aa)
	A0A317W5B0	Uncharacterized protein. (142 aa)
	A0A317VMK7	Dynactin domain-containing protein. (1039 aa)

Your Current Organism:

Aspergillus heteromorphus

NCBI taxonomy Id: 1448321
Other names: A. heteromorphus CBS 117.55, Aspergillus heteromorphus CBS 117.55

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317VMK7	A0A317W5B0	Dynactin domain-containing protein.	Uncharacterized protein.	0.405
A0A317VMK7	A0A317W8B3	Dynactin domain-containing protein.	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	0.835
A0A317VMK7	A0A317WAD3	Dynactin domain-containing protein.	Rhodopsin family protein.	0.757
A0A317VMK7	A0A317WE70	Dynactin domain-containing protein.	Uncharacterized protein.	0.782
A0A317VMK7	A0A317WGW1	Dynactin domain-containing protein.	Uncharacterized protein.	0.983
A0A317VMK7	A0A317WS18	Dynactin domain-containing protein.	Actin-1; Belongs to the actin family.	0.942
A0A317VMK7	A0A317WTD3	Dynactin domain-containing protein.	Cytoplasmic dynein intermediate chain.	0.981
A0A317VMK7	A0A317WYB1	Dynactin domain-containing protein.	Dynein light intermediate chain.	0.976
A0A317W5B0	A0A317VMK7	Uncharacterized protein.	Dynactin domain-containing protein.	0.405
A0A317W5B0	A0A317W8B3	Uncharacterized protein.	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	0.948
A0A317W5B0	A0A317WAD3	Uncharacterized protein.	Rhodopsin family protein.	0.937
A0A317W5B0	A0A317WE70	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A317W5B0	A0A317WGW1	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A317W5B0	A0A317WTD3	Uncharacterized protein.	Cytoplasmic dynein intermediate chain.	0.994
A0A317W5B0	A0A317WYB1	Uncharacterized protein.	Dynein light intermediate chain.	0.920
A0A317W8B3	A0A317VMK7	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	Dynactin domain-containing protein.	0.835
A0A317W8B3	A0A317W5B0	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	Uncharacterized protein.	0.948
A0A317W8B3	A0A317WAD3	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	Rhodopsin family protein.	0.658
A0A317W8B3	A0A317WE70	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	Uncharacterized protein.	0.949
A0A317W8B3	A0A317WGW1	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	Uncharacterized protein.	0.981