(6 nodes) Mixed, incl. NADH:ubiquinone oxidoreductase, and MrpA C-terminal/MbhE network (Roseivivax halodurans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ETX14255.1	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)
	ETX14256.1	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	ETX14257.1	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)
	ETX14258.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
	ETX14259.1	NADH dehydrogenase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
	ETX14260.1	Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (620 aa)

Your Current Organism:

Roseivivax halodurans

NCBI taxonomy Id: 1449350
Other names: R. halodurans JCM 10272, Roseivivax halodurans JCM 10272

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ETX14255.1	ETX14256.1	OCH239_04090	OCH239_04105	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
ETX14255.1	ETX14257.1	OCH239_04090	OCH239_04110	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ETX14255.1	ETX14258.1	OCH239_04090	OCH239_04115	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
ETX14255.1	ETX14259.1	OCH239_04090	OCH239_04120	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
ETX14255.1	ETX14260.1	OCH239_04090	OCH239_04125	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
ETX14256.1	ETX14255.1	OCH239_04105	OCH239_04090	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
ETX14256.1	ETX14257.1	OCH239_04105	OCH239_04110	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ETX14256.1	ETX14258.1	OCH239_04105	OCH239_04115	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ETX14256.1	ETX14259.1	OCH239_04105	OCH239_04120	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ETX14256.1	ETX14260.1	OCH239_04105	OCH239_04125	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ETX14257.1	ETX14255.1	OCH239_04110	OCH239_04090	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ETX14257.1	ETX14256.1	OCH239_04110	OCH239_04105	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ETX14257.1	ETX14258.1	OCH239_04110	OCH239_04115	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ETX14257.1	ETX14259.1	OCH239_04110	OCH239_04120	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ETX14257.1	ETX14260.1	OCH239_04110	OCH239_04125	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ETX14258.1	ETX14255.1	OCH239_04115	OCH239_04090	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
ETX14258.1	ETX14256.1	OCH239_04115	OCH239_04105	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ETX14258.1	ETX14257.1	OCH239_04115	OCH239_04110	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ETX14258.1	ETX14259.1	OCH239_04115	OCH239_04120	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
ETX14258.1	ETX14260.1	OCH239_04115	OCH239_04125	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977