STRINGSTRING
KALB_992 KALB_992 KALB_1022 KALB_1022 KALB_1023 KALB_1023 KALB_1056 KALB_1056 KALB_1069 KALB_1069 rph rph KALB_1293 KALB_1293 orn orn KALB_1523 KALB_1523 KALB_1575 KALB_1575 KALB_1593 KALB_1593 KALB_1601 KALB_1601 KALB_1606 KALB_1606 KALB_1670 KALB_1670 ybeY ybeY KALB_1776 KALB_1776 KALB_190 KALB_190 KALB_192 KALB_192 KALB_1976 KALB_1976 KALB_1993 KALB_1993 KALB_2 KALB_2 KALB_2126 KALB_2126 KALB_220 KALB_220 KALB_2319 KALB_2319 KALB_2374 KALB_2374 KALB_2448 KALB_2448 vapC vapC KALB_2544 KALB_2544 KALB_2601 KALB_2601 polA polA uvrB uvrB KALB_2670 KALB_2670 KALB_2713 KALB_2713 uvrC uvrC recD2 recD2 KALB_2831 KALB_2831 KALB_2869 KALB_2869 KALB_2902 KALB_2902 KALB_301 KALB_301 KALB_3032 KALB_3032 KALB_3092 KALB_3092 KALB_3245 KALB_3245 KALB_3343 KALB_3343 KALB_337 KALB_337 KALB_3432 KALB_3432 KALB_3658 KALB_3658 KALB_3680 KALB_3680 KALB_3811 KALB_3811 KALB_3932 KALB_3932 KALB_3981 KALB_3981 KALB_4435 KALB_4435 KALB_4455 KALB_4455 KALB_4467 KALB_4467 KALB_4851 KALB_4851 KALB_4863 KALB_4863 KALB_4868 KALB_4868 KALB_4869 KALB_4869 KALB_4954 KALB_4954 KALB_4957 KALB_4957 KALB_5036 KALB_5036 KALB_5223 KALB_5223 KALB_5224 KALB_5224 KALB_5227 KALB_5227 KALB_5262 KALB_5262 KALB_5309 KALB_5309 KALB_5854 KALB_5854 KALB_5949 KALB_5949 KALB_5966 KALB_5966 KALB_6018 KALB_6018 KALB_6030 KALB_6030 KALB_6048 KALB_6048 KALB_6100 KALB_6100 rnz rnz KALB_6242 KALB_6242 KALB_6257 KALB_6257 KALB_6367 KALB_6367 uvrA uvrA KALB_6509 KALB_6509 KALB_6532 KALB_6532 ruvC ruvC vapC-2 vapC-2 vapC-3 vapC-3 KALB_6787 KALB_6787 KALB_6812 KALB_6812 vapC-4 vapC-4 KALB_6829 KALB_6829 KALB_6944 KALB_6944 KALB_6980 KALB_6980 KALB_7026 KALB_7026 KALB_7084 KALB_7084 rnj rnj rnhB rnhB rnc rnc KALB_7357 KALB_7357 KALB_7358 KALB_7358 vapC-5 vapC-5 KALB_7582 KALB_7582 KALB_7644 KALB_7644 KALB_771 KALB_771 KALB_7962 KALB_7962 nfi nfi KALB_8048 KALB_8048 dnaE2 dnaE2 KALB_8122 KALB_8122 KALB_8285 KALB_8285 KALB_8387 KALB_8387 KALB_8450 KALB_8450 KALB_8596 KALB_8596 vapC-6 vapC-6 KALB_8757 KALB_8757 KALB_8792 KALB_8792 KALB_8840 KALB_8840 xseB xseB xseA xseA sbcD sbcD KALB_91 KALB_91
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KALB_992Hypothetical protein. (283 aa)
KALB_1022ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily. (1067 aa)
KALB_1023UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (1175 aa)
KALB_1056Hypothetical protein. (361 aa)
KALB_1069Ribonuclease R. (476 aa)
rphRibonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (263 aa)
KALB_1293Hypothetical protein. (312 aa)
ornOligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. (203 aa)
KALB_1523HNH endonuclease. (184 aa)
KALB_1575Exonuclease RNase T and DNA polymerase III. (253 aa)
KALB_1593Hypothetical protein. (141 aa)
KALB_1601Hypothetical protein. (120 aa)
KALB_1606Ribonuclease, Rne/Rng family. (912 aa)
KALB_1670Putative secreted protein. (154 aa)
ybeYPutative rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (188 aa)
KALB_1776Hypothetical protein. (359 aa)
KALB_190Hypothetical protein. (237 aa)
KALB_192ABC transporter ATP-binding protein. (752 aa)
KALB_1976Hypothetical protein. (572 aa)
KALB_1993Hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA. (167 aa)
KALB_2DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (378 aa)
KALB_2126Hypothetical protein. (371 aa)
KALB_220Hypothetical protein. (413 aa)
KALB_2319Hypothetical protein. (359 aa)
KALB_2374Metal-dependent phosphohydrolase HD sub domain protein. (229 aa)
KALB_2448Hypothetical protein. (359 aa)
vapCHypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (144 aa)
KALB_2544Exonuclease, RNase T and DNA polymerase III. (408 aa)
KALB_2601Hypothetical protein. (392 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (901 aa)
uvrBUvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] (716 aa)
KALB_2670Hypothetical protein. (371 aa)
KALB_2713Hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (172 aa)
uvrCUvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (657 aa)
recD2Exodeoxyribonuclease V, alpha subunit; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. (735 aa)
KALB_2831Hypothetical protein. (357 aa)
KALB_2869Hypothetical protein. (354 aa)
KALB_2902Hypothetical protein. (370 aa)
KALB_301DNA polymerase III subunit beta. (363 aa)
KALB_3032RecB family exonuclease. (284 aa)
KALB_3092Hypothetical protein. (378 aa)
KALB_3245Hypothetical protein. (373 aa)
KALB_3343Hypothetical protein. (359 aa)
KALB_337DNA polymerase III, delta' subunit; ATPase involved in DNA replication. (398 aa)
KALB_3432Hypothetical protein. (360 aa)
KALB_3658Hypothetical protein. (208 aa)
KALB_3680Hypothetical protein. (157 aa)
KALB_3811Metal dependent phosphohydrolase. (212 aa)
KALB_3932Secreted protein. (224 aa)
KALB_3981Hypothetical protein. (796 aa)
KALB_4435Hypothetical protein. (268 aa)
KALB_4455Hypothetical protein. (304 aa)
KALB_4467Hypothetical protein. (548 aa)
KALB_4851Hypothetical protein. (262 aa)
KALB_4863Hypothetical protein. (389 aa)
KALB_4868Hypothetical protein. (364 aa)
KALB_4869Hypothetical protein. (334 aa)
KALB_4954Hypothetical protein. (51 aa)
KALB_4957Hypothetical protein. (269 aa)
KALB_5036Hypothetical protein. (1694 aa)
KALB_5223Hypothetical protein. (234 aa)
KALB_5224Hypothetical protein. (193 aa)
KALB_5227Hypothetical protein. (242 aa)
KALB_5262Hypothetical protein. (270 aa)
KALB_5309Hypothetical protein. (465 aa)
KALB_5854Hypothetical protein. (765 aa)
KALB_5949Hypothetical protein. (355 aa)
KALB_5966Hypothetical protein. (363 aa)
KALB_6018Hypothetical protein. (375 aa)
KALB_6030Hypothetical protein. (355 aa)
KALB_6048Hypothetical protein. (355 aa)
KALB_6100Hypothetical protein. (371 aa)
rnzHypothetical protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (304 aa)
KALB_6242Hypothetical protein. (360 aa)
KALB_6257Hypothetical protein. (379 aa)
KALB_6367Hypothetical protein. (357 aa)
uvrAHypothetical protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (952 aa)
KALB_6509Hypothetical protein. (140 aa)
KALB_6532Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (128 aa)
ruvCHypothetical protein; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (191 aa)
vapC-2Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (133 aa)
vapC-3Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (133 aa)
KALB_6787Hypothetical protein. (338 aa)
KALB_6812Hypothetical protein. (401 aa)
vapC-4Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (132 aa)
KALB_6829Hypothetical protein. (35 aa)
KALB_6944Hypothetical protein. (360 aa)
KALB_6980Hypothetical protein. (342 aa)
KALB_7026Hypothetical protein. (359 aa)
KALB_7084Hypothetical protein. (1184 aa)
rnjHypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (565 aa)
rnhBHypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (262 aa)
rncHypothetical protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (250 aa)
KALB_7357Hypothetical protein. (146 aa)
KALB_7358Hypothetical protein. (140 aa)
vapC-5Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (132 aa)
KALB_7582Hypothetical protein. (198 aa)
KALB_7644Hypothetical protein. (244 aa)
KALB_771Hypothetical protein. (398 aa)
KALB_7962Hypothetical protein. (114 aa)
nfiHypothetical protein; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. (222 aa)
KALB_8048Hypothetical protein. (265 aa)
dnaE2Hypothetical protein; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1099 aa)
KALB_8122Hypothetical protein. (758 aa)
KALB_8285Hypothetical protein. (246 aa)
KALB_8387Hypothetical protein. (333 aa)
KALB_8450Hypothetical protein. (400 aa)
KALB_8596Hypothetical protein. (212 aa)
vapC-6Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (142 aa)
KALB_8757Hypothetical protein. (256 aa)
KALB_8792Hypothetical protein. (292 aa)
KALB_8840Hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (97 aa)
xseBHypothetical protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (76 aa)
xseAExodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (416 aa)
sbcDPutative ATP-dependent dsDNA exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (375 aa)
KALB_91formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. (288 aa)
Your Current Organism:
Kutzneria albida
NCBI taxonomy Id: 1449976
Other names: K. albida DSM 43870, Kutzneria albida DSM 43870
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.