(10 nodes) Small interfering RNA (siRNA) biogenesis, and Dicer dimerisation domain network (Aspergillus homomorphus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A395HKY3	Uncharacterized protein. (345 aa)
	A0A395HQ54	Uncharacterized protein. (387 aa)
	A0A395HRN3	RNA-dependent RNA polymerase. (1374 aa)
	A0A395HVC9	Putative translin-associated factor TraX. (293 aa)
	A0A395HWZ3	Dicer-like protein 2-1; Belongs to the helicase family. Dicer subfamily. (1388 aa)
	A0A395HZA3	Uncharacterized protein. (1034 aa)
	A0A395I2U1	Dicer-like protein 1; Belongs to the helicase family. Dicer subfamily. (1494 aa)
	A0A395I634	Eukaryotic translation initiation factor 2c; Belongs to the argonaute family. (899 aa)
	A0A395I6B4	Recombination hotspot-binding protein. (235 aa)
	A0A395IC00	Piwi-domain-containing protein. (1102 aa)

Your Current Organism:

Aspergillus homomorphus

NCBI taxonomy Id: 1450537
Other names: A. homomorphus CBS 101889, Aspergillus homomorphus CBS 101889

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A395HKY3	A0A395I634	Uncharacterized protein.	Eukaryotic translation initiation factor 2c; Belongs to the argonaute family.	0.632
A0A395HKY3	A0A395IC00	Uncharacterized protein.	Piwi-domain-containing protein.	0.632
A0A395HQ54	A0A395I634	Uncharacterized protein.	Eukaryotic translation initiation factor 2c; Belongs to the argonaute family.	0.632
A0A395HQ54	A0A395IC00	Uncharacterized protein.	Piwi-domain-containing protein.	0.632
A0A395HRN3	A0A395HWZ3	RNA-dependent RNA polymerase.	Dicer-like protein 2-1; Belongs to the helicase family. Dicer subfamily.	0.713
A0A395HRN3	A0A395HZA3	RNA-dependent RNA polymerase.	Uncharacterized protein.	0.478
A0A395HRN3	A0A395I2U1	RNA-dependent RNA polymerase.	Dicer-like protein 1; Belongs to the helicase family. Dicer subfamily.	0.743
A0A395HRN3	A0A395I634	RNA-dependent RNA polymerase.	Eukaryotic translation initiation factor 2c; Belongs to the argonaute family.	0.475
A0A395HRN3	A0A395IC00	RNA-dependent RNA polymerase.	Piwi-domain-containing protein.	0.470
A0A395HVC9	A0A395I634	Putative translin-associated factor TraX.	Eukaryotic translation initiation factor 2c; Belongs to the argonaute family.	0.805
A0A395HVC9	A0A395I6B4	Putative translin-associated factor TraX.	Recombination hotspot-binding protein.	0.999
A0A395HVC9	A0A395IC00	Putative translin-associated factor TraX.	Piwi-domain-containing protein.	0.805
A0A395HWZ3	A0A395HRN3	Dicer-like protein 2-1; Belongs to the helicase family. Dicer subfamily.	RNA-dependent RNA polymerase.	0.713
A0A395HWZ3	A0A395HZA3	Dicer-like protein 2-1; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.496
A0A395HWZ3	A0A395I2U1	Dicer-like protein 2-1; Belongs to the helicase family. Dicer subfamily.	Dicer-like protein 1; Belongs to the helicase family. Dicer subfamily.	0.546
A0A395HWZ3	A0A395I634	Dicer-like protein 2-1; Belongs to the helicase family. Dicer subfamily.	Eukaryotic translation initiation factor 2c; Belongs to the argonaute family.	0.960
A0A395HWZ3	A0A395IC00	Dicer-like protein 2-1; Belongs to the helicase family. Dicer subfamily.	Piwi-domain-containing protein.	0.960
A0A395HZA3	A0A395HRN3	Uncharacterized protein.	RNA-dependent RNA polymerase.	0.478
A0A395HZA3	A0A395HWZ3	Uncharacterized protein.	Dicer-like protein 2-1; Belongs to the helicase family. Dicer subfamily.	0.496
A0A395HZA3	A0A395I634	Uncharacterized protein.	Eukaryotic translation initiation factor 2c; Belongs to the argonaute family.	0.454