12 items (Aspergillus homomorphus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A395HI92	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (95 aa)
	A0A395HJ70	U5 small nuclear ribonucleo protein component. (986 aa)
	A0A395HML2	PROCN-domain-containing protein. (2352 aa)
	A0A395HNF3	Sm-like ribonucleo protein. (218 aa)
	A0A395HP48	Pre-mRNA splicing helicase. (2928 aa)
	A0A395HW37	Uncharacterized protein. (481 aa)
	A0A395HWA3	GYF domain-containing protein. (448 aa)
	A0A395I301	Small nuclear ribonucleoprotein G. (78 aa)
	A0A395I3T5	Small nuclear ribonucleoprotein Sm D2. (115 aa)
	A0A395I6A4	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
	A0A395IAX9	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
	A0A395ICT7	SFM domain-containing protein. (375 aa)

Your Current Organism:

Aspergillus homomorphus

NCBI taxonomy Id: 1450537
Other names: A. homomorphus CBS 101889, Aspergillus homomorphus CBS 101889

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A395HI92	A0A395HJ70	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	U5 small nuclear ribonucleo protein component.	0.996
A0A395HI92	A0A395HML2	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	PROCN-domain-containing protein.	0.994
A0A395HI92	A0A395HNF3	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Sm-like ribonucleo protein.	0.999
A0A395HI92	A0A395HP48	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Pre-mRNA splicing helicase.	0.994
A0A395HI92	A0A395HWA3	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	GYF domain-containing protein.	0.762
A0A395HI92	A0A395I301	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein G.	0.999
A0A395HI92	A0A395I3T5	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D2.	0.999
A0A395HI92	A0A395I6A4	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.986
A0A395HI92	A0A395IAX9	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
A0A395HI92	A0A395ICT7	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	SFM domain-containing protein.	0.774
A0A395HJ70	A0A395HI92	U5 small nuclear ribonucleo protein component.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.996
A0A395HJ70	A0A395HML2	U5 small nuclear ribonucleo protein component.	PROCN-domain-containing protein.	0.999
A0A395HJ70	A0A395HNF3	U5 small nuclear ribonucleo protein component.	Sm-like ribonucleo protein.	0.993
A0A395HJ70	A0A395HP48	U5 small nuclear ribonucleo protein component.	Pre-mRNA splicing helicase.	0.999
A0A395HJ70	A0A395HW37	U5 small nuclear ribonucleo protein component.	Uncharacterized protein.	0.966
A0A395HJ70	A0A395HWA3	U5 small nuclear ribonucleo protein component.	GYF domain-containing protein.	0.902
A0A395HJ70	A0A395I301	U5 small nuclear ribonucleo protein component.	Small nuclear ribonucleoprotein G.	0.994
A0A395HJ70	A0A395I3T5	U5 small nuclear ribonucleo protein component.	Small nuclear ribonucleoprotein Sm D2.	0.995
A0A395HJ70	A0A395I6A4	U5 small nuclear ribonucleo protein component.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.999
A0A395HJ70	A0A395IAX9	U5 small nuclear ribonucleo protein component.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.996