(11 nodes) Mismatched DNA binding network (Aspergillus homomorphus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A395I3Z2	Putative hydrolase. (284 aa)
	A0A395I660	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1133 aa)
	A0A395I7N8	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1225 aa)
	A0A395IBJ7	MutL_C domain-containing protein. (951 aa)
	A0A395HID3	DNA_mis_repair domain-containing protein. (854 aa)
	A0A395HNC2	DNA mismatch repair protein Msh1. (1000 aa)
	A0A395HPK0	P-loop containing nucleoside triphosphate hydrolase protein. (1432 aa)
	A0A395HRC8	DNA mismatch repair protein Msh5. (944 aa)
	A0A395HU05	DNA_MISMATCH_REPAIR_2 domain-containing protein. (1614 aa)
	A0A395I0P3	Serinc-domain-containing protein. (1451 aa)
	A0A395I228	DNA mismatch repair protein MutL. (753 aa)

Your Current Organism:

Aspergillus homomorphus

NCBI taxonomy Id: 1450537
Other names: A. homomorphus CBS 101889, Aspergillus homomorphus CBS 101889

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A395HID3	A0A395HNC2	DNA_mis_repair domain-containing protein.	DNA mismatch repair protein Msh1.	0.963
A0A395HID3	A0A395HPK0	DNA_mis_repair domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.545
A0A395HID3	A0A395HRC8	DNA_mis_repair domain-containing protein.	DNA mismatch repair protein Msh5.	0.941
A0A395HID3	A0A395HU05	DNA_mis_repair domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.975
A0A395HID3	A0A395I0P3	DNA_mis_repair domain-containing protein.	Serinc-domain-containing protein.	0.807
A0A395HID3	A0A395I228	DNA_mis_repair domain-containing protein.	DNA mismatch repair protein MutL.	0.993
A0A395HID3	A0A395I660	DNA_mis_repair domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.950
A0A395HID3	A0A395I7N8	DNA_mis_repair domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.984
A0A395HID3	A0A395IBJ7	DNA_mis_repair domain-containing protein.	MutL_C domain-containing protein.	0.721
A0A395HNC2	A0A395HID3	DNA mismatch repair protein Msh1.	DNA_mis_repair domain-containing protein.	0.963
A0A395HNC2	A0A395I0P3	DNA mismatch repair protein Msh1.	Serinc-domain-containing protein.	0.949
A0A395HNC2	A0A395I228	DNA mismatch repair protein Msh1.	DNA mismatch repair protein MutL.	0.984
A0A395HNC2	A0A395I660	DNA mismatch repair protein Msh1.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.957
A0A395HNC2	A0A395I7N8	DNA mismatch repair protein Msh1.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.977
A0A395HNC2	A0A395IBJ7	DNA mismatch repair protein Msh1.	MutL_C domain-containing protein.	0.897
A0A395HPK0	A0A395HID3	P-loop containing nucleoside triphosphate hydrolase protein.	DNA_mis_repair domain-containing protein.	0.545
A0A395HPK0	A0A395I0P3	P-loop containing nucleoside triphosphate hydrolase protein.	Serinc-domain-containing protein.	0.431
A0A395HPK0	A0A395I228	P-loop containing nucleoside triphosphate hydrolase protein.	DNA mismatch repair protein MutL.	0.684
A0A395HPK0	A0A395IBJ7	P-loop containing nucleoside triphosphate hydrolase protein.	MutL_C domain-containing protein.	0.604
A0A395HRC8	A0A395HID3	DNA mismatch repair protein Msh5.	DNA_mis_repair domain-containing protein.	0.941