(27 nodes) SNF2-like, N-terminal domain superfamily network (Aspergillus homomorphus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A395HQU0	Uncharacterized protein. (1814 aa)
	A0A395HQS1	TBP associated factor. (1898 aa)
	A0A395HQ43	Putative DNA helicase ino80. (1702 aa)
	A0A395HPN2	Uncharacterized protein. (1281 aa)
	A0A395HMM6	Putative chromatin remodeling complex subunit. (1469 aa)
	A0A395HYH5	Uncharacterized protein. (881 aa)
	A0A395I1F5	Helicase ATP-binding domain-containing protein. (1935 aa)
	A0A395I1I2	Uncharacterized protein. (980 aa)
	A0A395I2Y1	Uncharacterized protein. (852 aa)
	A0A395I4G8	Uncharacterized protein. (1340 aa)
	A0A395I626	Putative C-5 cytosine-specific DNA methylase. (2086 aa)
	A0A395I6K1	Nucleotide excision repair protein. (961 aa)
	A0A395I9J8	Uncharacterized protein. (1067 aa)
	A0A395IAX4	Uncharacterized protein. (1181 aa)
	A0A395HIR1	Uncharacterized protein. (1135 aa)
	A0A395HHR9	Uncharacterized protein. (916 aa)
	A0A395HGA4	Helicase ATP-binding domain-containing protein. (221 aa)
	A0A395HJV8	Uncharacterized protein. (1120 aa)
	A0A395HM32	Putative SNF2 family helicase/ATPase. (1474 aa)
	A0A395HUG9	Uncharacterized protein. (1521 aa)
	A0A395HJ28	Uncharacterized protein. (891 aa)
	A0A395HRH0	Uncharacterized protein. (1724 aa)
	A0A395HRT7	SNF2-family ATP dependent chromatin remodeling factor snf21. (1412 aa)
	A0A395HX35	DNA repair protein Rhp26/Rad26. (1224 aa)
	A0A395HWK8	Uncharacterized protein. (1123 aa)
	A0A395HUX2	SNF2 family helicase. (927 aa)
	A0A395HQZ7	Uncharacterized protein. (1697 aa)

Your Current Organism:

Aspergillus homomorphus

NCBI taxonomy Id: 1450537
Other names: A. homomorphus CBS 101889, Aspergillus homomorphus CBS 101889

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A395HGA4	A0A395HJ28	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.494
A0A395HGA4	A0A395HJV8	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.489
A0A395HGA4	A0A395HM32	Helicase ATP-binding domain-containing protein.	Putative SNF2 family helicase/ATPase.	0.412
A0A395HGA4	A0A395HPN2	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.409
A0A395HGA4	A0A395HQS1	Helicase ATP-binding domain-containing protein.	TBP associated factor.	0.442
A0A395HGA4	A0A395HQU0	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.672
A0A395HGA4	A0A395HRT7	Helicase ATP-binding domain-containing protein.	SNF2-family ATP dependent chromatin remodeling factor snf21.	0.461
A0A395HGA4	A0A395HWK8	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.472
A0A395HGA4	A0A395I2Y1	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.484
A0A395HGA4	A0A395I9J8	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.658
A0A395HHR9	A0A395HJ28	Uncharacterized protein.	Uncharacterized protein.	0.531
A0A395HHR9	A0A395HJV8	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A395HHR9	A0A395HM32	Uncharacterized protein.	Putative SNF2 family helicase/ATPase.	0.442
A0A395HHR9	A0A395HQS1	Uncharacterized protein.	TBP associated factor.	0.498
A0A395HHR9	A0A395HQU0	Uncharacterized protein.	Uncharacterized protein.	0.687
A0A395HHR9	A0A395HRT7	Uncharacterized protein.	SNF2-family ATP dependent chromatin remodeling factor snf21.	0.494
A0A395HHR9	A0A395HWK8	Uncharacterized protein.	Uncharacterized protein.	0.504
A0A395HHR9	A0A395I2Y1	Uncharacterized protein.	Uncharacterized protein.	0.532
A0A395HHR9	A0A395I6K1	Uncharacterized protein.	Nucleotide excision repair protein.	0.423
A0A395HHR9	A0A395I9J8	Uncharacterized protein.	Uncharacterized protein.	0.688