STRINGSTRING
A0A395I906 A0A395I906 A0A395HI92 A0A395HI92 LSM4 LSM4 LSM1 LSM1 A0A395IAX9 A0A395IAX9 A0A395I8H0 A0A395I8H0 LSM5 LSM5 LSM3 LSM3 A0A395I461 A0A395I461 A0A395I3T5 A0A395I3T5 A0A395I301 A0A395I301 A0A395I0S5 A0A395I0S5 A0A395HWC1 A0A395HWC1 A0A395HV76 A0A395HV76 LSM8 LSM8 A0A395HNF3 A0A395HNF3 A0A395HLG9 A0A395HLG9
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A395I906U6 snRNA-associated Sm-like protein LSm7. (139 aa)
A0A395HI92Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (95 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (119 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (175 aa)
A0A395IAX9Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
A0A395I8H0Small nuclear ribonucleoprotein Sm D3. (116 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (83 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
A0A395I461Sm domain-containing protein. (869 aa)
A0A395I3T5Small nuclear ribonucleoprotein Sm D2. (115 aa)
A0A395I301Small nuclear ribonucleoprotein G. (78 aa)
A0A395I0S5U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
A0A395HWC1Uncharacterized protein. (565 aa)
A0A395HV76Sm domain-containing protein. (117 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
A0A395HNF3Sm-like ribonucleo protein. (218 aa)
A0A395HLG9Like-Sm ribonucleo protein. (80 aa)
Your Current Organism:
Aspergillus homomorphus
NCBI taxonomy Id: 1450537
Other names: A. homomorphus CBS 101889, Aspergillus homomorphus CBS 101889
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