(54 nodes) Nucleotide excision repair network (Aspergillus homomorphus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	A0A395HH52	FAD/NAD(P)-binding domain-containing protein. (530 aa)
	A0A395HHY3	Uncharacterized protein. (215 aa)
	A0A395HIJ6	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (456 aa)
	A0A395HJ49	DNA_pol_E_B domain-containing protein. (746 aa)
	A0A395HLQ2	ATP-dependent RNA helicase CHL1. (852 aa)
	A0A395HM66	DNA polymerase III subunit. (540 aa)
	A0A395HMV1	TFIIH basal transcription factor complex, subunit SSL2/RAD25. (821 aa)
	A0A395HN92	Activator 1 37 kDa subunit. (352 aa)
	A0A395HPE2	Uncharacterized protein. (510 aa)
	A0A395HPX5	Putative DNA repair protein Rex1. (72 aa)
	A0A395HQM5	WD repeat-containing protein. (562 aa)
	A0A395HQX0	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (870 aa)
	A0A395HRE5	Uncharacterized protein. (514 aa)
	A0A395HRW6	UV excision repair protein Rad23. (373 aa)
	A0A395HS83	Uncharacterized protein. (135 aa)
	A0A395HTG8	Ubiquitin ligase subunit HrtA. (120 aa)
	A0A395HU54	WD repeat protein. (478 aa)
	A0A395HUF6	HMG box domain-containing protein. (332 aa)
	A0A395HUS5	Uncharacterized protein. (145 aa)
	A0A395HUS6	Activator 1 subunit 3. (392 aa)
	A0A395HVJ0	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2218 aa)
	A0A395HWL7	Replication factor C subunit 2. (389 aa)
	A0A395HWU6	Rad4-domain-containing protein. (964 aa)
	A0A395HX35	DNA repair protein Rhp26/Rad26. (1224 aa)
	A0A395HX56	Histone-fold-containing protein. (321 aa)
	A0A395HXQ8	Putative DNA repair protein RAD1. (975 aa)
	A0A395HYH5	Uncharacterized protein. (881 aa)
	A0A395I035	PIN domain-like protein. (1162 aa)
	A0A395I1G7	Transcription factor Tfb4. (369 aa)
	A0A395I1V4	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (479 aa)
	A0A395I2K6	Cyclin-like protein; Belongs to the cyclin family. (429 aa)
	A0A395I3H3	Cullin-4B; Belongs to the cullin family. (2548 aa)
	A0A395I4C8	Replication factor A protein 3. (118 aa)
	A0A395I4E4	Uncharacterized protein. (447 aa)
	A0A395I6F2	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (604 aa)
	A0A395I6R7	P-loop containing nucleoside triphosphate hydrolase protein. (1163 aa)
	A0A395I6Y7	DNA polymerase. (1106 aa)
	A0A395I711	Putative serine/threonine protein kinase; Belongs to the protein kinase superfamily. (404 aa)
	A0A395I747	Putative DNA polymerase delta subunit 4. (197 aa)
	A0A395I758	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (216 aa)
	A0A395I7U0	CDK-activating kinase assembly factor MAT1. (382 aa)
	A0A395I866	DNA ligase. (890 aa)
	A0A395I972	Zds_C domain-containing protein. (859 aa)
	A0A395I9V1	DUF572-domain-containing protein. (302 aa)
	A0A395I9X8	DNA repair protein. (370 aa)
	A0A395IA82	DNA repair helicase RAD3. (805 aa)
	A0A395IAF8	Damage-specific DNA binding protein. (1140 aa)
	A0A395IAG1	Replication factor-a protein. (289 aa)
	A0A395IBC3	RNA polymerase II transcription factor subunit 1. (643 aa)
	A0A395IBC5	DNA ligase. (838 aa)
	A0A395IBR0	DNA repair protein rad10. (333 aa)
	A0A395IBU4	Rad4-domain-containing protein. (990 aa)
	A0A395IC06	AAA domain-containing protein. (588 aa)
	A0A395IC14	Replication factor C subunit 1. (1067 aa)

Your Current Organism:

Aspergillus homomorphus

NCBI taxonomy Id: 1450537
Other names: A. homomorphus CBS 101889, Aspergillus homomorphus CBS 101889

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A395HH52	A0A395HLQ2	FAD/NAD(P)-binding domain-containing protein.	ATP-dependent RNA helicase CHL1.	0.402
A0A395HH52	A0A395HXQ8	FAD/NAD(P)-binding domain-containing protein.	Putative DNA repair protein RAD1.	0.690
A0A395HH52	A0A395I6F2	FAD/NAD(P)-binding domain-containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.796
A0A395HH52	A0A395IA82	FAD/NAD(P)-binding domain-containing protein.	DNA repair helicase RAD3.	0.428
A0A395HH52	A0A395IAG1	FAD/NAD(P)-binding domain-containing protein.	Replication factor-a protein.	0.784
A0A395HH52	A0A395IBR0	FAD/NAD(P)-binding domain-containing protein.	DNA repair protein rad10.	0.590
A0A395HHY3	A0A395I758	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.799
A0A395HHY3	A0A395I9V1	Uncharacterized protein.	DUF572-domain-containing protein.	0.798
A0A395HIJ6	A0A395HLQ2	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	ATP-dependent RNA helicase CHL1.	0.973
A0A395HIJ6	A0A395HMV1	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	TFIIH basal transcription factor complex, subunit SSL2/RAD25.	0.999
A0A395HIJ6	A0A395HN92	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Activator 1 37 kDa subunit.	0.660
A0A395HIJ6	A0A395HPX5	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Putative DNA repair protein Rex1.	0.998
A0A395HIJ6	A0A395HQM5	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	WD repeat-containing protein.	0.677
A0A395HIJ6	A0A395HRW6	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	UV excision repair protein Rad23.	0.750
A0A395HIJ6	A0A395HU54	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	WD repeat protein.	0.798
A0A395HIJ6	A0A395HUF6	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	HMG box domain-containing protein.	0.828
A0A395HIJ6	A0A395HUS6	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Activator 1 subunit 3.	0.660
A0A395HIJ6	A0A395HWL7	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Replication factor C subunit 2.	0.660
A0A395HIJ6	A0A395HWU6	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Rad4-domain-containing protein.	0.868
A0A395HIJ6	A0A395HX35	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA repair protein Rhp26/Rad26.	0.721