(21 nodes) Sphingolipid metabolism network (Aspergillus saccharolyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A318Z043	Uncharacterized protein. (293 aa)
	A0A318Z2D4	DNase I-like protein. (496 aa)
	A0A318Z3D7	Neutral ceramidase. (770 aa)
	A0A318Z4S5	Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide. Belongs to the acid sphingomyelinase family. (636 aa)
	A0A318Z6R8	Alkaline phytoceramidase. (327 aa)
	A0A318Z7D9	Mannose-binding lectin. (444 aa)
	A0A318Z7I2	Putative alkaline phytoceramidase. (277 aa)
	A0A318ZAT8	APHC-domain-containing protein. (240 aa)
	A0A318ZB05	Sphingosine kinase. (481 aa)
	A0A318ZE45	Longevity assurance proteins LAG1/LAC1. (440 aa)
	A0A318ZJ45	TLC domain-containing protein. (469 aa)
	A0A318ZKR9	Endopolyphosphatase; Catalyzes the hydrolysis of inorganic polyphosphate (polyP) chains of many hundreds of phosphate residues into shorter lengths. (611 aa)
	A0A318ZKV0	DAGKc domain-containing protein. (504 aa)
	A0A318ZMS6	Uncharacterized protein. (136 aa)
	A0A318ZPC6	Uncharacterized protein. (585 aa)
	A0A318ZQ65	Beach-domain-containing protein. (2492 aa)
	A0A318ZYV8	Sphinganine hydroxylase BasA; Belongs to the sterol desaturase family. (420 aa)
	A0A318ZZC4	acidPPc domain-containing protein. (532 aa)
	A0A318ZZI6	Ceramide synthase membrane component. (441 aa)
	A0A319AEE6	Sphinganine-1-phosphate aldolase BST1. (572 aa)
	A0A319ASS5	TLC domain-containing protein. (350 aa)

Your Current Organism:

Aspergillus saccharolyticus

NCBI taxonomy Id: 1450539
Other names: A. saccharolyticus JOP 1030-1, Aspergillus saccharolyticus JOP 1030-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A318Z043	A0A318Z2D4	Uncharacterized protein.	DNase I-like protein.	0.604
A0A318Z043	A0A318Z3D7	Uncharacterized protein.	Neutral ceramidase.	0.677
A0A318Z043	A0A318Z6R8	Uncharacterized protein.	Alkaline phytoceramidase.	0.714
A0A318Z043	A0A318Z7D9	Uncharacterized protein.	Mannose-binding lectin.	0.465
A0A318Z043	A0A318Z7I2	Uncharacterized protein.	Putative alkaline phytoceramidase.	0.643
A0A318Z043	A0A318ZAT8	Uncharacterized protein.	APHC-domain-containing protein.	0.643
A0A318Z043	A0A318ZB05	Uncharacterized protein.	Sphingosine kinase.	0.573
A0A318Z043	A0A318ZKV0	Uncharacterized protein.	DAGKc domain-containing protein.	0.573
A0A318Z043	A0A318ZPC6	Uncharacterized protein.	Uncharacterized protein.	0.602
A0A318Z043	A0A318ZYV8	Uncharacterized protein.	Sphinganine hydroxylase BasA; Belongs to the sterol desaturase family.	0.729
A0A318Z043	A0A318ZZC4	Uncharacterized protein.	acidPPc domain-containing protein.	0.755
A0A318Z2D4	A0A318Z043	DNase I-like protein.	Uncharacterized protein.	0.604
A0A318Z2D4	A0A318Z3D7	DNase I-like protein.	Neutral ceramidase.	0.929
A0A318Z2D4	A0A318Z4S5	DNase I-like protein.	Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide. Belongs to the acid sphingomyelinase family.	0.904
A0A318Z2D4	A0A318Z6R8	DNase I-like protein.	Alkaline phytoceramidase.	0.664
A0A318Z2D4	A0A318Z7I2	DNase I-like protein.	Putative alkaline phytoceramidase.	0.664
A0A318Z2D4	A0A318ZAT8	DNase I-like protein.	APHC-domain-containing protein.	0.664
A0A318Z2D4	A0A318ZB05	DNase I-like protein.	Sphingosine kinase.	0.642
A0A318Z2D4	A0A318ZE45	DNase I-like protein.	Longevity assurance proteins LAG1/LAC1.	0.604
A0A318Z2D4	A0A318ZJ45	DNase I-like protein.	TLC domain-containing protein.	0.604