(5 nodes) rDNA heterochromatin, and Heterochromatin boundary formation network (Aspergillus saccharolyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A318ZBP0	HMG-box. (309 aa)
	A0A318ZJX2	Uncharacterized protein. (899 aa)
	A0A318ZK43	Uncharacterized protein. (1003 aa)
	A0A318ZTV3	Methyl-CpG-binding domain-containing protein 4. (308 aa)
	A0A319AJG3	Chromatin remodeling complex subunit. (1447 aa)

Your Current Organism:

Aspergillus saccharolyticus

NCBI taxonomy Id: 1450539
Other names: A. saccharolyticus JOP 1030-1, Aspergillus saccharolyticus JOP 1030-1

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A318ZBP0	A0A318ZJX2	HMG-box.	Uncharacterized protein.	0.569
A0A318ZBP0	A0A318ZK43	HMG-box.	Uncharacterized protein.	0.784
A0A318ZBP0	A0A318ZTV3	HMG-box.	Methyl-CpG-binding domain-containing protein 4.	0.543
A0A318ZBP0	A0A319AJG3	HMG-box.	Chromatin remodeling complex subunit.	0.746
A0A318ZJX2	A0A318ZBP0	Uncharacterized protein.	HMG-box.	0.569
A0A318ZJX2	A0A318ZTV3	Uncharacterized protein.	Methyl-CpG-binding domain-containing protein 4.	0.639
A0A318ZJX2	A0A319AJG3	Uncharacterized protein.	Chromatin remodeling complex subunit.	0.662
A0A318ZK43	A0A318ZBP0	Uncharacterized protein.	HMG-box.	0.784
A0A318ZK43	A0A318ZTV3	Uncharacterized protein.	Methyl-CpG-binding domain-containing protein 4.	0.557
A0A318ZK43	A0A319AJG3	Uncharacterized protein.	Chromatin remodeling complex subunit.	0.877
A0A318ZTV3	A0A318ZBP0	Methyl-CpG-binding domain-containing protein 4.	HMG-box.	0.543
A0A318ZTV3	A0A318ZJX2	Methyl-CpG-binding domain-containing protein 4.	Uncharacterized protein.	0.639
A0A318ZTV3	A0A318ZK43	Methyl-CpG-binding domain-containing protein 4.	Uncharacterized protein.	0.557
A0A318ZTV3	A0A319AJG3	Methyl-CpG-binding domain-containing protein 4.	Chromatin remodeling complex subunit.	0.939
A0A319AJG3	A0A318ZBP0	Chromatin remodeling complex subunit.	HMG-box.	0.746
A0A319AJG3	A0A318ZJX2	Chromatin remodeling complex subunit.	Uncharacterized protein.	0.662
A0A319AJG3	A0A318ZK43	Chromatin remodeling complex subunit.	Uncharacterized protein.	0.877
A0A319AJG3	A0A318ZTV3	Chromatin remodeling complex subunit.	Methyl-CpG-binding domain-containing protein 4.	0.939