(26 nodes) U2-type prespliceosome network (Aspergillus saccharolyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A318Z3P4	GH16 domain-containing protein. (426 aa)
	A0A319ATN7	Uncharacterized protein. (1579 aa)
	A0A319ABZ6	Putative splicing factor 3B subunit 1. (1233 aa)
	A0A319AB14	U1 snRNP splicing complex subunit. (285 aa)
	A0A319AAZ2	Uncharacterized protein. (604 aa)
	A0A319A6J3	Uncharacterized protein. (762 aa)
	A0A319A1H9	SF1-HH domain-containing protein. (216 aa)
	A0A318ZQJ9	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (95 aa)
	A0A318ZPT9	Matrin-type domain-containing protein. (238 aa)
	A0A318ZNR8	Splicing factor 3b subunit 4. (353 aa)
	A0A318ZLB1	Small nuclear ribonucleoprotein G. (78 aa)
	A0A318ZKX6	Sm-like ribonucleo protein. (218 aa)
	A0A318ZH37	Splicing factor 3a, subunit 3. (504 aa)
	A0A318ZGD9	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (122 aa)
	A0A318ZFN0	Uncharacterized protein. (836 aa)
	A0A318ZFJ5	P-loop containing nucleoside triphosphate hydrolase protein. (1191 aa)
	A0A318ZF87	Cell cycle control protein. (675 aa)
	A0A318ZF63	Surp module. (550 aa)
	A0A318ZBG4	Small nuclear ribonucleoprotein Sm D2. (115 aa)
	A0A318Z9P9	FF domain protein. (573 aa)
	A0A318Z8S7	Splicing factor 3b, subunit 2. (564 aa)
	A0A318Z7E4	U6 snRNA-associated Sm-like protein LSm7. (142 aa)
	A0A318Z2I2	Uncharacterized protein. (585 aa)
	A0A318Z0K3	RNA binding domain protein. (195 aa)
	A0A318Z082	GH16 domain-containing protein. (393 aa)
	A0A318YZQ3	RNA-binding domain-containing protein. (397 aa)

Your Current Organism:

Aspergillus saccharolyticus

NCBI taxonomy Id: 1450539
Other names: A. saccharolyticus JOP 1030-1, Aspergillus saccharolyticus JOP 1030-1

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A318YZQ3	A0A318Z082	RNA-binding domain-containing protein.	GH16 domain-containing protein.	0.915
A0A318YZQ3	A0A318Z0K3	RNA-binding domain-containing protein.	RNA binding domain protein.	0.965
A0A318YZQ3	A0A318Z2I2	RNA-binding domain-containing protein.	Uncharacterized protein.	0.948
A0A318YZQ3	A0A318Z3P4	RNA-binding domain-containing protein.	GH16 domain-containing protein.	0.915
A0A318YZQ3	A0A318Z7E4	RNA-binding domain-containing protein.	U6 snRNA-associated Sm-like protein LSm7.	0.559
A0A318YZQ3	A0A318Z8S7	RNA-binding domain-containing protein.	Splicing factor 3b, subunit 2.	0.957
A0A318YZQ3	A0A318Z9P9	RNA-binding domain-containing protein.	FF domain protein.	0.474
A0A318YZQ3	A0A318ZBG4	RNA-binding domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.996
A0A318YZQ3	A0A318ZF63	RNA-binding domain-containing protein.	Surp module.	0.701
A0A318YZQ3	A0A318ZFJ5	RNA-binding domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.783
A0A318YZQ3	A0A318ZFN0	RNA-binding domain-containing protein.	Uncharacterized protein.	0.944
A0A318YZQ3	A0A318ZGD9	RNA-binding domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.995
A0A318YZQ3	A0A318ZH37	RNA-binding domain-containing protein.	Splicing factor 3a, subunit 3.	0.912
A0A318YZQ3	A0A318ZKX6	RNA-binding domain-containing protein.	Sm-like ribonucleo protein.	0.987
A0A318YZQ3	A0A318ZLB1	RNA-binding domain-containing protein.	Small nuclear ribonucleoprotein G.	0.995
A0A318YZQ3	A0A318ZNR8	RNA-binding domain-containing protein.	Splicing factor 3b subunit 4.	0.955
A0A318YZQ3	A0A318ZPT9	RNA-binding domain-containing protein.	Matrin-type domain-containing protein.	0.923
A0A318YZQ3	A0A318ZQJ9	RNA-binding domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.994
A0A318YZQ3	A0A319A1H9	RNA-binding domain-containing protein.	SF1-HH domain-containing protein.	0.622
A0A318YZQ3	A0A319A6J3	RNA-binding domain-containing protein.	Uncharacterized protein.	0.986