(23 nodes) ncRNA transcription network (Aspergillus saccharolyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A318Z1E5	Uncharacterized protein. (241 aa)
	A0A318Z1J9	Uncharacterized protein. (292 aa)
	A0A318Z2V9	B-block_TFIIIC domain-containing protein. (1855 aa)
	A0A318Z480	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (361 aa)
	A0A318Z501	Uncharacterized protein. (74 aa)
	A0A318Z6M4	Uncharacterized protein. (497 aa)
	A0A318Z783	Uncharacterized protein. (1785 aa)
	A0A318Z9R2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1239 aa)
	A0A318ZCH0	DNA-directed RNA polymerase subunit E. (169 aa)
	A0A318ZEI1	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (251 aa)
	A0A318ZIB3	Uncharacterized protein. (1027 aa)
	A0A318ZJU9	DNA-directed RNA polymerase III polypeptide. (194 aa)
	A0A318ZKY6	DNA-directed RNA polymerase I and III 14 kDa polypeptide. (137 aa)
	A0A318ZLC9	Uncharacterized protein. (988 aa)
	A0A318ZN96	RNA polymerase II transcription elongation factor Rtf1p. (611 aa)
	A0A318ZNZ5	Histone H3 variant. (181 aa)
	A0A318ZQJ0	Uncharacterized protein. (650 aa)
	A0A318ZR28	DNA-directed RNA polymerase I, II, and III subunit Rpb6. (159 aa)
	A0A318ZTV1	RNA polymerase III transcription factor TFIIIC subunit Tfc4. (1080 aa)
	A0A318ZU12	Uncharacterized protein. (1003 aa)
	A0A318ZVF5	Histone H3; Belongs to the histone H3 family. (136 aa)
	A0A319A087	SWIB-domain-containing protein. (283 aa)
	A0A319AH24	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (81 aa)

Your Current Organism:

Aspergillus saccharolyticus

NCBI taxonomy Id: 1450539
Other names: A. saccharolyticus JOP 1030-1, Aspergillus saccharolyticus JOP 1030-1

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A318Z1J9	A0A318ZR28	Uncharacterized protein.	DNA-directed RNA polymerase I, II, and III subunit Rpb6.	0.637
A0A318Z2V9	A0A318Z501	B-block_TFIIIC domain-containing protein.	Uncharacterized protein.	0.541
A0A318Z2V9	A0A318ZJU9	B-block_TFIIIC domain-containing protein.	DNA-directed RNA polymerase III polypeptide.	0.615
A0A318Z2V9	A0A318ZTV1	B-block_TFIIIC domain-containing protein.	RNA polymerase III transcription factor TFIIIC subunit Tfc4.	0.963
A0A318Z2V9	A0A319AH24	B-block_TFIIIC domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.667
A0A318Z501	A0A318Z2V9	Uncharacterized protein.	B-block_TFIIIC domain-containing protein.	0.541
A0A318Z501	A0A318Z6M4	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A318Z501	A0A318Z9R2	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
A0A318Z501	A0A318ZCH0	Uncharacterized protein.	DNA-directed RNA polymerase subunit E.	0.998
A0A318Z501	A0A318ZEI1	Uncharacterized protein.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.947
A0A318Z501	A0A318ZIB3	Uncharacterized protein.	Uncharacterized protein.	0.647
A0A318Z501	A0A318ZJU9	Uncharacterized protein.	DNA-directed RNA polymerase III polypeptide.	0.995
A0A318Z501	A0A318ZKY6	Uncharacterized protein.	DNA-directed RNA polymerase I and III 14 kDa polypeptide.	0.998
A0A318Z501	A0A318ZLC9	Uncharacterized protein.	Uncharacterized protein.	0.631
A0A318Z501	A0A318ZN96	Uncharacterized protein.	RNA polymerase II transcription elongation factor Rtf1p.	0.905
A0A318Z501	A0A318ZNZ5	Uncharacterized protein.	Histone H3 variant.	0.923
A0A318Z501	A0A318ZR28	Uncharacterized protein.	DNA-directed RNA polymerase I, II, and III subunit Rpb6.	0.999
A0A318Z501	A0A318ZVF5	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.923
A0A318Z501	A0A319AH24	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
A0A318Z6M4	A0A318Z501	Uncharacterized protein.	Uncharacterized protein.	0.992