(41 nodes) RNA polymerase network (Aspergillus saccharolyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A318Z7Z9	RBP11-like subunits of RNA polymerase. (202 aa)
	A0A318Z2P5	Endo/exonuclease/phosphatase domain-containing protein. (303 aa)
	A0A319AMW4	Transcription elongation factor. (301 aa)
	A0A319AH24	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (81 aa)
	A0A319AEN8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1222 aa)
	A0A319A6C2	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (520 aa)
	A0A319A0A4	Uncharacterized protein. (794 aa)
	A0A319A018	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1741 aa)
	A0A318ZZK5	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (235 aa)
	A0A318ZY09	RPOL4c domain-containing protein. (148 aa)
	A0A318ZXI9	RNA polymerase II subunit 3. (337 aa)
	A0A318ZR28	DNA-directed RNA polymerase I, II, and III subunit Rpb6. (159 aa)
	A0A318ZQ81	DNA-directed RNA polymerases I and III 40 kDa polypeptide. (374 aa)
	A0A318ZPS7	CBF/NF-Y family transcription factor. (188 aa)
	A0A318ZNC8	Uncharacterized protein. (562 aa)
	A0A318ZNA4	RBR-type E3 ubiquitin transferase. (615 aa)
	GUF1	Translation factor GUF1, mitochondrial; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2113 aa)
	A0A318ZLE2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1677 aa)
	A0A318ZKY6	DNA-directed RNA polymerase I and III 14 kDa polypeptide. (137 aa)
	A0A318ZJU9	DNA-directed RNA polymerase III polypeptide. (194 aa)
	A0A318ZIQ4	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (360 aa)
	A0A318ZHT2	Uncharacterized protein. (913 aa)
	A0A318ZHJ6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (128 aa)
	A0A318ZHG1	UreD-domain-containing protein. (365 aa)
	A0A318ZH94	Uncharacterized protein. (327 aa)
	A0A318ZGK8	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (565 aa)
	A0A318ZEX3	Zf-CSL-domain-containing protein. (470 aa)
	A0A318ZEI1	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (251 aa)
	A0A318ZDB0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (117 aa)
	A0A318ZD91	SAP30_Sin3_bdg domain-containing protein. (248 aa)
	A0A318ZCH0	DNA-directed RNA polymerase subunit E. (169 aa)
	A0A318ZC31	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)
	A0A318Z9R2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1239 aa)
	A0A318Z9E0	Uncharacterized protein. (281 aa)
	A0A318Z4M0	Uncharacterized protein. (649 aa)
	A0A318Z6Q8	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (144 aa)
	A0A318Z6M4	Uncharacterized protein. (497 aa)
	A0A318Z572	Uncharacterized protein. (478 aa)
	A0A318Z551	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1244 aa)
	A0A318Z501	Uncharacterized protein. (74 aa)
	A0A318Z2B6	Uncharacterized protein. (516 aa)

Your Current Organism:

Aspergillus saccharolyticus

NCBI taxonomy Id: 1450539
Other names: A. saccharolyticus JOP 1030-1, Aspergillus saccharolyticus JOP 1030-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A318Z2B6	A0A318Z501	A0A318Z2B6	A0A318Z501	Uncharacterized protein.	Uncharacterized protein.	0.975
A0A318Z2B6	A0A318Z551	A0A318Z2B6	A0A318Z551	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.972
A0A318Z2B6	A0A318Z6M4	A0A318Z2B6	A0A318Z6M4	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A318Z2B6	A0A318Z6Q8	A0A318Z2B6	A0A318Z6Q8	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.976
A0A318Z2B6	A0A318Z7Z9	A0A318Z2B6	A0A318Z7Z9	Uncharacterized protein.	RBP11-like subunits of RNA polymerase.	0.980
A0A318Z2B6	A0A318Z9R2	A0A318Z2B6	A0A318Z9R2	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.914
A0A318Z2B6	A0A318ZC31	A0A318Z2B6	A0A318ZC31	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.861
A0A318Z2B6	A0A318ZD91	A0A318Z2B6	A0A318ZD91	Uncharacterized protein.	SAP30_Sin3_bdg domain-containing protein.	0.861
A0A318Z2B6	A0A318ZDB0	A0A318Z2B6	A0A318ZDB0	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.880
A0A318Z2B6	A0A318ZHJ6	A0A318Z2B6	A0A318ZHJ6	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.973
A0A318Z2B6	A0A318ZHT2	A0A318Z2B6	A0A318ZHT2	Uncharacterized protein.	Uncharacterized protein.	0.738
A0A318Z2B6	A0A318ZKY6	A0A318Z2B6	A0A318ZKY6	Uncharacterized protein.	DNA-directed RNA polymerase I and III 14 kDa polypeptide.	0.410
A0A318Z2B6	A0A318ZQ81	A0A318Z2B6	A0A318ZQ81	Uncharacterized protein.	DNA-directed RNA polymerases I and III 40 kDa polypeptide.	0.938
A0A318Z2B6	A0A318ZR28	A0A318Z2B6	A0A318ZR28	Uncharacterized protein.	DNA-directed RNA polymerase I, II, and III subunit Rpb6.	0.973
A0A318Z2B6	A0A318ZXI9	A0A318Z2B6	A0A318ZXI9	Uncharacterized protein.	RNA polymerase II subunit 3.	0.973
A0A318Z2B6	A0A318ZY09	A0A318Z2B6	A0A318ZY09	Uncharacterized protein.	RPOL4c domain-containing protein.	0.973
A0A318Z2B6	A0A318ZZK5	A0A318Z2B6	A0A318ZZK5	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.977
A0A318Z2B6	A0A319A018	A0A318Z2B6	A0A319A018	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.733
A0A318Z2B6	A0A319AEN8	A0A318Z2B6	A0A319AEN8	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.914
A0A318Z2B6	A0A319AH24	A0A318Z2B6	A0A319AH24	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.972