(58 nodes) Basal transcription factors network (Aspergillus saccharolyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A318ZLH0	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (705 aa)
	A0A318Z0D7	Mitochondrion protein. (288 aa)
	A0A318Z262	Transcription initiation protein. (345 aa)
	A0A318Z2N2	TFIID-18kDa-domain-containing protein. (194 aa)
	A0A318Z489	Uncharacterized protein. (653 aa)
	A0A318Z4W3	Putative PHD finger domain protein. (839 aa)
	A0A318Z6B4	Cyclin-like protein; Belongs to the cyclin family. (482 aa)
	A0A318Z6H0	Transcription initiation factor TFIID complex subunit. (445 aa)
	A0A318Z6I5	TFIIH basal transcription factor complex, subunit SSL2/RAD25. (821 aa)
	A0A318Z7I4	C6 zinc finger domain protein. (752 aa)
	A0A318Z8E1	Uncharacterized protein. (427 aa)
	A0A318Z8G6	Putative TATA-box-binding protein. (262 aa)
	A0A318Z8T0	Chromatin modification-related protein. (458 aa)
	A0A318Z8T1	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (456 aa)
	A0A318Z910	Glucose-fructose oxidoreductase. (350 aa)
	A0A318Z9I8	Zn(2)-C6 fungal-type domain-containing protein. (403 aa)
	A0A318Z9T1	Trimethylguanosine synthase. (1146 aa)
	A0A318ZAW7	Ebp2-domain-containing protein. (376 aa)
	A0A318ZAX4	Transcription initiation factor IID, TAF10 subunit. (287 aa)
	A0A318ZAY4	Transcription factor Tfb4. (390 aa)
	A0A318ZB95	Putative C6 transcription factor. (932 aa)
	A0A318ZBY3	TFIID_20kDa domain-containing protein. (627 aa)
	A0A318ZCI5	Uncharacterized protein. (378 aa)
	A0A318ZD97	Chromatin modification-related protein. (833 aa)
	A0A318ZDK3	Histone-fold-containing protein. (430 aa)
	A0A318ZDR0	TFIID-31kDa-domain-containing protein. (316 aa)
	A0A318ZDS4	Transcription factor IIA, alpha/beta subunit. (402 aa)
	A0A318ZFZ5	Uncharacterized protein. (298 aa)
	A0A318ZH52	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (294 aa)
	A0A318ZHI5	Uncharacterized protein. (327 aa)
	A0A318ZI01	RNA polymerase II transcription factor. (641 aa)
	A0A318ZI19	Uncharacterized protein. (268 aa)
	A0A318ZIE1	DUF4211 domain-containing protein. (648 aa)
	A0A318ZJL3	Uncharacterized protein. (417 aa)
	A0A318ZJQ4	Putative rRNA biogenesis protein RRP5. (1801 aa)
	A0A318ZMD7	Zn(2)-C6 fungal-type domain-containing protein. (742 aa)
	A0A318ZMT0	BRO1 domain-containing protein. (563 aa)
	A0A318ZNC4	Uncharacterized protein. (668 aa)
	A0A318ZNE5	Uncharacterized protein. (723 aa)
	A0A318ZNV8	DNA repair helicase RAD3. (800 aa)
	A0A318ZPZ2	Uncharacterized protein. (299 aa)
	A0A318ZQX1	Uncharacterized protein. (1095 aa)
	A0A318ZRE7	Methyltransferase. (284 aa)
	A0A318ZTM7	WD40 repeat-like protein. (721 aa)
	A0A318ZUG8	Bromodomain associated protein. (214 aa)
	A0A319A0M9	Transcription factor TFIIE complex alpha subunit. (461 aa)
	A0A319A1M8	HMG box domain-containing protein. (329 aa)
	A0A319A209	RNA binding protein. (613 aa)
	A0A319A507	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (488 aa)
	A0A319A5E2	Putative serine/threonine protein kinase; Belongs to the protein kinase superfamily. (404 aa)
	A0A319A5F4	CDK-activating kinase assembly factor MAT1. (382 aa)
	A0A319A5Q9	Acyl_transf_3 domain-containing protein. (469 aa)
	A0A319A6P6	Uncharacterized protein. (1269 aa)
	A0A319AAJ8	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (111 aa)
	A0A319AHE1	Chromatin modification-related protein. (771 aa)
	A0A319AN51	TAFII55_N domain-containing protein. (501 aa)
	A0A319APR9	Urb2 domain-containing protein. (1485 aa)
	A0A319AQ77	Putative DNA repair protein Rex1. (66 aa)

Your Current Organism:

Aspergillus saccharolyticus

NCBI taxonomy Id: 1450539
Other names: A. saccharolyticus JOP 1030-1, Aspergillus saccharolyticus JOP 1030-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A318Z262	A0A318Z2N2	Transcription initiation protein.	TFIID-18kDa-domain-containing protein.	0.906
A0A318Z262	A0A318Z4W3	Transcription initiation protein.	Putative PHD finger domain protein.	0.994
A0A318Z262	A0A318Z6B4	Transcription initiation protein.	Cyclin-like protein; Belongs to the cyclin family.	0.953
A0A318Z262	A0A318Z6H0	Transcription initiation protein.	Transcription initiation factor TFIID complex subunit.	0.927
A0A318Z262	A0A318Z6I5	Transcription initiation protein.	TFIIH basal transcription factor complex, subunit SSL2/RAD25.	0.982
A0A318Z262	A0A318Z8G6	Transcription initiation protein.	Putative TATA-box-binding protein.	0.998
A0A318Z262	A0A318Z8T1	Transcription initiation protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.981
A0A318Z262	A0A318Z9T1	Transcription initiation protein.	Trimethylguanosine synthase.	0.981
A0A318Z262	A0A318ZAX4	Transcription initiation protein.	Transcription initiation factor IID, TAF10 subunit.	0.966
A0A318Z262	A0A318ZAY4	Transcription initiation protein.	Transcription factor Tfb4.	0.975
A0A318Z262	A0A318ZBY3	Transcription initiation protein.	TFIID_20kDa domain-containing protein.	0.953
A0A318Z262	A0A318ZCI5	Transcription initiation protein.	Uncharacterized protein.	0.994
A0A318Z262	A0A318ZDK3	Transcription initiation protein.	Histone-fold-containing protein.	0.935
A0A318Z262	A0A318ZDR0	Transcription initiation protein.	TFIID-31kDa-domain-containing protein.	0.978
A0A318Z262	A0A318ZDS4	Transcription initiation protein.	Transcription factor IIA, alpha/beta subunit.	0.983
A0A318Z262	A0A318ZH52	Transcription initiation protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.982
A0A318Z262	A0A318ZI01	Transcription initiation protein.	RNA polymerase II transcription factor.	0.976
A0A318Z262	A0A318ZIE1	Transcription initiation protein.	DUF4211 domain-containing protein.	0.869
A0A318Z262	A0A318ZJL3	Transcription initiation protein.	Uncharacterized protein.	0.965
A0A318Z262	A0A318ZLH0	Transcription initiation protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.989