(12 nodes) OmpR/PhoB-type DNA-binding domain network (Aneurinibacillus sp. XH2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMA73008.1	PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	AMA71478.1	PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	AMA71817.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	AMA72944.1	PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	AMA73245.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	AMA73398.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	AMA73625.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)
	AMA73629.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)
	AMA73961.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	AMA74183.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	AMA74348.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	AMA74381.1	PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)

Your Current Organism:

Aneurinibacillus sp. XH2

NCBI taxonomy Id: 1450761
Other names: A. sp. XH2

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMA73398.1	AMA73625.1	ACH33_11395	ACH33_12670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
AMA73398.1	AMA73629.1	ACH33_11395	ACH33_12690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AMA73625.1	AMA73398.1	ACH33_12670	ACH33_11395	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
AMA73625.1	AMA73629.1	ACH33_12670	ACH33_12690	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AMA73629.1	AMA73398.1	ACH33_12690	ACH33_11395	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AMA73629.1	AMA73625.1	ACH33_12690	ACH33_12670	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905