STRINGSTRING
pksN pksN pksN-2 pksN-2 pksR pksR ppsE ppsE srfAA srfAA dltA-2 dltA-2 ppsA ppsA dltA-3 dltA-3 dltA-4 dltA-4 AJF85153.1 AJF85153.1 AJF86270.1 AJF86270.1 dhbF dhbF dltA-7 dltA-7 srfAC srfAC srfAD srfAD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pksNPolyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (5060 aa)
pksN-2Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (5517 aa)
pksRPolyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2574 aa)
ppsEATP-dependent isoleucine adenylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family. (1275 aa)
srfAAPeptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2552 aa)
dltA-2Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2577 aa)
ppsAPeptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2560 aa)
dltA-3Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2602 aa)
dltA-4Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (5363 aa)
AJF85153.1Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (3980 aa)
AJF86270.1Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)
dhbFDiguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2394 aa)
dltA-7Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (3590 aa)
srfACPeptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1276 aa)
srfADThioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
Your Current Organism:
Bacillus atrophaeus
NCBI taxonomy Id: 1452
Other names: ATCC 49337, B. atrophaeus, Bacillus atriphaeus, Bacillus sp. S2 BC-2, Bacillus subtilis DSM 2277, Bacillus subtilis DSM 675, CCUG 28524, CIP 107159, DSM 7264, IFO 15539, JCM 9070, LMG 16797, LMG:16797, NBRC 15539, NRRL NRS-213
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