(46 nodes) Mostly uncharacterized, incl. Virion, and Metalloendopeptidase activity network (Bacillus atrophaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJF84183.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	AJF87675.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	AJF87680.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)
	AJF84357.1	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	AJF84438.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	AJF84443.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0736 family. (250 aa)
	AJF84481.1	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (84 aa)
	AJF84785.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
	AJF84786.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (79 aa)
	AJF84797.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
	AJF87707.1	Swarming motility protein SwrB; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
	cotE	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
	AJF85283.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (67 aa)
	AJF85683.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)
	AJF85693.1	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (556 aa)
	AJF85694.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	AJF85725.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
	AJF85726.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	AJF85739.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
	AJF85746.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	spoVB	Stage V sporulation protein B; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
	AJF85872.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
	spoIVFB	Stage IV sporulation protein FB; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	spoIVFA	Stage IV sporulation protein FA; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	ysxE	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	spoVID	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (861 aa)
	AJF85930.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	gerM	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	sspI	Small acid-soluble spore protein SspI; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SspI family. (70 aa)
	ytrH	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
	AJF86029.1	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)
	AJF86094.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	ytkD	7,8-dihydro-8-oxoguanine-triphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family. (158 aa)
	yutH	Endospore coat-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	AJF86302.1	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	rsfA	Prespore-specific transcriptional regulator RsfA; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	gerQ	Spore coat protein; Essential for the localization of CwlJ in the spore coat and for spore germination triggered by calcium and dipicolinic acid (DPA). Its assembly into the spore coat is dependent on the coat morphogenetic proteins CotE and SpoIVA. (183 aa)
	AJF87138.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	AJF87150.1	Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (107 aa)
	AJF87152.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (74 aa)
	bofA	sigma-K factor-processing regulatory protein BofA; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
	AJF87154.1	CsfB; Derived by automated computational analysis using gene prediction method: Protein Homology. (64 aa)
	AJF87195.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	AJF87196.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	AJF87283.1	Spore gernimation protein GerD; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
	cwlJ	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)

Your Current Organism:

Bacillus atrophaeus

NCBI taxonomy Id: 1452
Other names: ATCC 49337, B. atrophaeus, Bacillus atriphaeus, Bacillus sp. S2 BC-2, Bacillus subtilis DSM 2277, Bacillus subtilis DSM 675, CCUG 28524, CIP 107159, DSM 7264, IFO 15539, JCM 9070, LMG 16797, LMG:16797, NBRC 15539, NRRL NRS-213

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJF84183.1	AJF84357.1	TD68_01440	TD68_02475	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AJF84183.1	AJF85283.1	TD68_01440	TD68_07520	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
AJF84183.1	AJF87680.1	TD68_01440	TD68_02255	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
AJF84183.1	ytkD	TD68_01440	TD68_12105	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	7,8-dihydro-8-oxoguanine-triphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.	0.687
AJF84357.1	AJF84183.1	TD68_02475	TD68_01440	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AJF84357.1	AJF84438.1	TD68_02475	TD68_02890	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AJF84357.1	AJF84443.1	TD68_02475	TD68_02920	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0736 family.	0.576
AJF84357.1	AJF84481.1	TD68_02475	TD68_03130	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
AJF84357.1	AJF84785.1	TD68_02475	TD68_04740	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
AJF84357.1	AJF84786.1	TD68_02475	TD68_04745	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
AJF84357.1	AJF85283.1	TD68_02475	TD68_07520	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.681
AJF84357.1	AJF85683.1	TD68_02475	TD68_09645	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.512
AJF84357.1	AJF85725.1	TD68_02475	TD68_09865	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
AJF84357.1	AJF85726.1	TD68_02475	TD68_09870	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
AJF84357.1	AJF85746.1	TD68_02475	TD68_09970	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AJF84357.1	AJF85930.1	TD68_02475	TD68_10935	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
AJF84357.1	AJF86029.1	TD68_02475	TD68_11455	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
AJF84357.1	AJF86094.1	TD68_02475	TD68_11805	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
AJF84357.1	AJF87152.1	TD68_02475	TD68_17605	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
AJF84357.1	AJF87680.1	TD68_02475	TD68_02255	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581

page 1 of 56

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About