Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AJF84054.1 | AJF87535.1 | TD68_00775 | TD68_19795 | Alpha-galacturonidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.511 |
| AJF84054.1 | araD | TD68_00775 | TD68_11200 | Alpha-galacturonidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.802 |
| AJF84054.1 | uxaC | TD68_00775 | TD68_03375 | Alpha-galacturonidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.921 |
| AJF87535.1 | AJF84054.1 | TD68_19795 | TD68_00775 | Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Alpha-galacturonidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.511 |
| araA | araB | TD68_11210 | TD68_11205 | Arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. | Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.998 |
| araA | araD | TD68_11210 | TD68_11200 | Arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. | Catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.995 |
| araB | araA | TD68_11205 | TD68_11210 | Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. | 0.998 |
| araB | araD | TD68_11205 | TD68_11200 | Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.997 |
| araB | rhaB | TD68_11205 | TD68_12525 | Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Rhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family. | 0.410 |
| araB | rpe | TD68_11205 | TD68_05155 | Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family. | 0.915 |
| araD | AJF84054.1 | TD68_11200 | TD68_00775 | Catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology. | Alpha-galacturonidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.802 |
| araD | araA | TD68_11200 | TD68_11210 | Catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology. | Arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. | 0.995 |
| araD | araB | TD68_11200 | TD68_11205 | Catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.997 |
| araD | rhaB | TD68_11200 | TD68_12525 | Catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology. | Rhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family. | 0.437 |
| araD | rpe | TD68_11200 | TD68_05155 | Catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family. | 0.918 |
| araD | uxaC | TD68_11200 | TD68_03375 | Catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.828 |
| galU | tuaD | TD68_14730 | TD68_14680 | UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.962 |
| galU | ywqF | TD68_14730 | TD68_15025 | UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.963 |
| kduD | kduI1 | TD68_08075 | TD68_08070 | 3-ketoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. | 0.995 |
| kduD | rpe | TD68_08075 | TD68_05155 | 3-ketoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family. | 0.800 |
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