(38 nodes) Mixed, incl. RNA polymerase sigma-70 like, and Negative regulation of RNA metabolic process network (Sediminicola sp. YIK13)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALM06413.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (282 aa)
	ALM06414.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (96 aa)
	ALM06415.1	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (169 aa)
	ALM06481.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
	ALM06482.1	Membrane or secreted protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
	ALM06483.1	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	ALM06484.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
	ALM09116.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	ALM06681.1	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (164 aa)
	ALM06682.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	ALM07085.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
	ALM07086.1	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (163 aa)
	ALM07199.1	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
	ALM07381.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)
	ALM07382.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	ALM07385.1	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (180 aa)
	ALM07386.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)
	ALM07387.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
	ALM07411.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
	ALM07412.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	ALM07413.1	CDP-alcohol phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (255 aa)
	ALM07414.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
	ALM09190.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
	ALM09191.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1069 aa)
	ALM07415.1	Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology. (648 aa)
	ALM07416.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	ALM07417.1	Osmotically inducible protein C; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	ALM07418.1	Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
	ALM07419.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (176 aa)
	ALM07420.1	anti-sigma-K factor RskA; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	ALM09238.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (586 aa)
	ALM07843.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (170 aa)
	ALM07844.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	ALM07845.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (853 aa)
	ALM08315.1	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
	ALM08400.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (177 aa)
	ALM09294.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	ALM09013.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)

Your Current Organism:

Sediminicola sp. YIK13

NCBI taxonomy Id: 1453352
Other names: S. sp. YIK13

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALM06413.1	ALM06414.1	SB49_00230	SB49_00235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.538
ALM06413.1	ALM06415.1	SB49_00230	SB49_00240	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.538
ALM06414.1	ALM06413.1	SB49_00235	SB49_00230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.538
ALM06414.1	ALM06415.1	SB49_00235	SB49_00240	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.773
ALM06415.1	ALM06413.1	SB49_00240	SB49_00230	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.538
ALM06415.1	ALM06414.1	SB49_00240	SB49_00235	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
ALM06415.1	ALM06481.1	SB49_00240	SB49_00625	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.715
ALM06415.1	ALM06483.1	SB49_00240	SB49_00635	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
ALM06415.1	ALM06484.1	SB49_00240	SB49_00640	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.655
ALM06415.1	ALM07199.1	SB49_00240	SB49_04830	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.722
ALM06415.1	ALM07419.1	SB49_00240	SB49_06080	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.673
ALM06415.1	ALM07420.1	SB49_00240	SB49_06085	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	anti-sigma-K factor RskA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
ALM06415.1	ALM07843.1	SB49_00240	SB49_08585	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.699
ALM06415.1	ALM08400.1	SB49_00240	SB49_11700	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.746
ALM06415.1	ALM09013.1	SB49_00240	SB49_15350	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.720
ALM06481.1	ALM06415.1	SB49_00625	SB49_00240	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.715
ALM06481.1	ALM06482.1	SB49_00625	SB49_00630	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Membrane or secreted protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
ALM06481.1	ALM06483.1	SB49_00625	SB49_00635	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
ALM06481.1	ALM06484.1	SB49_00625	SB49_00640	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.639
ALM06481.1	ALM06681.1	SB49_00625	SB49_01815	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.718