(13 nodes) RNA polymerase sigma-70 like, and Anti-sigma K factor RskA network (Sediminicola sp. YIK13)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALM06481.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
	ALM06482.1	Membrane or secreted protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
	ALM06483.1	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	ALM06484.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
	ALM07085.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
	ALM07086.1	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (163 aa)
	ALM07199.1	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
	ALM09238.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (586 aa)
	ALM07843.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (170 aa)
	ALM07844.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	ALM07845.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (853 aa)
	ALM08400.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (177 aa)
	ALM09013.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)

Your Current Organism:

Sediminicola sp. YIK13

NCBI taxonomy Id: 1453352
Other names: S. sp. YIK13

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALM06481.1	ALM06482.1	SB49_00625	SB49_00630	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Membrane or secreted protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
ALM06481.1	ALM06483.1	SB49_00625	SB49_00635	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
ALM06481.1	ALM06484.1	SB49_00625	SB49_00640	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.639
ALM06481.1	ALM07086.1	SB49_00625	SB49_04175	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.689
ALM06481.1	ALM07843.1	SB49_00625	SB49_08585	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.727
ALM06481.1	ALM09013.1	SB49_00625	SB49_15350	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.771
ALM06482.1	ALM06481.1	SB49_00630	SB49_00625	Membrane or secreted protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.745
ALM06482.1	ALM06483.1	SB49_00630	SB49_00635	Membrane or secreted protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
ALM06482.1	ALM06484.1	SB49_00630	SB49_00640	Membrane or secreted protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.563
ALM06483.1	ALM06481.1	SB49_00635	SB49_00625	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.703
ALM06483.1	ALM06482.1	SB49_00635	SB49_00630	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane or secreted protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
ALM06483.1	ALM06484.1	SB49_00635	SB49_00640	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.949
ALM06483.1	ALM07086.1	SB49_00635	SB49_04175	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.408
ALM06483.1	ALM07199.1	SB49_00635	SB49_04830	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.408
ALM06483.1	ALM07843.1	SB49_00635	SB49_08585	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.408
ALM06483.1	ALM08400.1	SB49_00635	SB49_11700	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.408
ALM06483.1	ALM09013.1	SB49_00635	SB49_15350	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.408
ALM06484.1	ALM06481.1	SB49_00640	SB49_00625	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.639
ALM06484.1	ALM06482.1	SB49_00640	SB49_00630	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Membrane or secreted protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
ALM06484.1	ALM06483.1	SB49_00640	SB49_00635	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949